RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 F8W1H4 67 aa10.61□□□□□ -0.71
USH1C-201ENST00000005226 NPFFO15130 113 aa10.61□□□□□ -0.71
USH1C-201ENST00000005226 GAGE13Q4V321 117 aa10.61□□□□□ -0.71
USH1C-201ENST00000005226 MORN3Q6PF18 240 aaPredicted RBP10.61□□□□□ -0.71
USH1C-201ENST00000005226 DUSP14O95147 198 aaKnown RBP10.61□□□□□ -0.71
USH1C-201ENST00000005226 EDN2P20800 178 aa10.61□□□□□ -0.71
USH1C-201ENST00000005226 MUC4Q99102 2169 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 TRAV12-1A0A0B4J245 112 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 ZNF815PA8K554 130 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 LY6EQ16553 131 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 TAL2Q16559 108 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 ORMDL2Q53FV1 153 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 OR10J6PQ8NGY7 276 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 MRPL53Q96EL3 112 aaKnown RBP10.6□□□□□ -0.71
USH1C-201ENST00000005226 SIGMAR1Q99720 223 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 DPH3P1Q9H4G8 78 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 PGPEP1Q9NXJ5 209 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 HOXA3O43365 443 aaPredicted RBP10.6□□□□□ -0.71
USH1C-201ENST00000005226 ASIPP42127 132 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 LMO4P61968 165 aa10.6□□□□□ -0.71
USH1C-201ENST00000005226 SCGB1D4Q6XE38 83 aa10.59□□□□□ -0.71
USH1C-201ENST00000005226 SPOCK3Q9BQ16 436 aa10.59□□□□□ -0.71
USH1C-201ENST00000005226 PRO0461Q9UI25 63 aa10.59□□□□□ -0.71
USH1C-201ENST00000005226 SPG11Q96JI7 2443 aa10.59□□□□□ -0.71
USH1C-201ENST00000005226 NCOR2Q9Y618 2525 aa10.59□□□□□ -0.71
USH1C-201ENST00000005226 TRAV21A0A0B4J279 112 aa10.59□□□□□ -0.71
USH1C-201ENST00000005226 A0A1B0GWB2 263 aa10.59□□□□□ -0.71
USH1C-201ENST00000005226 LINC01549A6NIU2 74 aa10.58□□□□□ -0.72
USH1C-201ENST00000005226 ZFP2Q6ZN57 461 aa10.58□□□□□ -0.72
USH1C-201ENST00000005226 C9orf139Q6ZV77 190 aa10.58□□□□□ -0.72
USH1C-201ENST00000005226 CHD8Q9HCK8 2581 aa10.58□□□□□ -0.72
USH1C-201ENST00000005226 APOMO95445 188 aa10.58□□□□□ -0.72
USH1C-201ENST00000005226 RNASE3P12724 160 aaKnown RBP10.58□□□□□ -0.72
USH1C-201ENST00000005226 RPL39P62891 51 aaKnown RBP10.58□□□□□ -0.72
USH1C-201ENST00000005226 SRSF9Q13242 221 aaKnown RBP eCLIP10.58□□□□□ -0.72
USH1C-201ENST00000005226 KLK9Q2XQG4 91 aa10.58□□□□□ -0.72
USH1C-201ENST00000005226 LINC00477Q96M19 166 aa10.58□□□□□ -0.72
USH1C-201ENST00000005226 MRPL16Q9NX20 251 aaKnown RBP10.58□□□□□ -0.72
USH1C-201ENST00000005226 KLK9Q9UKQ9 250 aa10.58□□□□□ -0.72
USH1C-201ENST00000005226 A0A087WWL8 130 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 LOC107984156A0A0G2JMH3 177 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 CRYGDP07320 174 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 ARL17AQ8IVW1 177 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.57□□□□□ -0.72
USH1C-201ENST00000005226 ABCA2Q9BZC7 2435 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 TSHBP01222 138 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 Q6ZS46 218 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 C11orf86A6NJI1 115 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 TGFAP01135 160 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 C20orf78Q9BR46 151 aa10.57□□□□□ -0.72
USH1C-201ENST00000005226 SORL1Q92673 2214 aa10.56□□□□□ -0.72
USH1C-201ENST00000005226 SOCS3O14543 225 aa10.56□□□□□ -0.72
USH1C-201ENST00000005226 PSMB2P49721 201 aa10.56□□□□□ -0.72
USH1C-201ENST00000005226 PTH2Q96A98 100 aa10.56□□□□□ -0.72
USH1C-201ENST00000005226 CRYBG3Q68DQ2 2970 aa10.56□□□□□ -0.72
USH1C-201ENST00000005226 SMCPP49901 116 aaPredicted RBP10.56□□□□□ -0.72
USH1C-201ENST00000005226 TP53TG1Q9Y2A0 90 aa10.56□□□□□ -0.72
USH1C-201ENST00000005226 ZNF418Q8TF45 676 aaPredicted RBP10.55□□□□□ -0.72
USH1C-201ENST00000005226 SPTBN4Q9H254 2564 aa10.55□□□□□ -0.72
USH1C-201ENST00000005226 F5H697 171 aa10.55□□□□□ -0.72
USH1C-201ENST00000005226 OVOL1O14753 267 aa10.55□□□□□ -0.72
USH1C-201ENST00000005226 PF4V1P10720 104 aa10.54□□□□□ -0.72
USH1C-201ENST00000005226 MOB4Q9Y3A3 225 aa10.54□□□□□ -0.72
USH1C-201ENST00000005226 IGKV3-20P01619 116 aa10.54□□□□□ -0.72
USH1C-201ENST00000005226 COX6B1P14854 86 aa10.54□□□□□ -0.72
USH1C-201ENST00000005226 NBL1P41271 181 aa10.54□□□□□ -0.72
USH1C-201ENST00000005226 LINC00315P59091 139 aa10.54□□□□□ -0.72
USH1C-201ENST00000005226 BLCAPP62952 87 aa10.54□□□□□ -0.72
USH1C-201ENST00000005226 OPRPNQ99935 248 aaPredicted RBP10.54□□□□□ -0.72
USH1C-201ENST00000005226 RHPN1-AS1Q9BWJ2 59 aa10.54□□□□□ -0.72
USH1C-201ENST00000005226 LENEPQ9Y5L5 61 aa10.54□□□□□ -0.72
USH1C-201ENST00000005226 IGLV4-69A0A075B6H9 119 aa10.53□□□□□ -0.72
USH1C-201ENST00000005226 TSPAN13O95857 204 aa10.53□□□□□ -0.72
USH1C-201ENST00000005226 TSPEAR-AS2P59090 65 aa10.53□□□□□ -0.72
USH1C-201ENST00000005226 C19orf54Q5BKX5 351 aa10.53□□□□□ -0.72
USH1C-201ENST00000005226 CELSR2Q9HCU4 2923 aa10.53□□□□□ -0.72
USH1C-201ENST00000005226 J3QR89 54 aa10.53□□□□□ -0.72
USH1C-201ENST00000005226 NDUFS8O00217 210 aa10.53□□□□□ -0.72
USH1C-201ENST00000005226 CSPG4Q6UVK1 2322 aa10.53□□□□□ -0.72
USH1C-201ENST00000005226 TRAV12-3A0A0B4J271 114 aa10.52□□□□□ -0.72
USH1C-201ENST00000005226 FAM223BA6NKX1 122 aa10.52□□□□□ -0.72
USH1C-201ENST00000005226 KLRB1Q12918 225 aa10.52□□□□□ -0.72
USH1C-201ENST00000005226 FAM74A4Q5TZK3 123 aa10.52□□□□□ -0.72
USH1C-201ENST00000005226 SUMO4Q6EEV6 95 aa10.52□□□□□ -0.72
USH1C-201ENST00000005226 NFE4Q86UQ8 179 aa10.52□□□□□ -0.72
USH1C-201ENST00000005226 FAM223AQ8IWN6 122 aa10.52□□□□□ -0.72
USH1C-201ENST00000005226 KIF25-AS1Q9Y6Z4 181 aa10.52□□□□□ -0.72
USH1C-201ENST00000005226 TMEM170BQ5T4T1 132 aa10.52□□□□□ -0.73
USH1C-201ENST00000005226 NDUFA4O00483 81 aa10.51□□□□□ -0.73
USH1C-201ENST00000005226 IGHV4-38-2P0DP08 117 aa10.51□□□□□ -0.73
USH1C-201ENST00000005226 FAM19A4Q96LR4 140 aa10.51□□□□□ -0.73
USH1C-201ENST00000005226 ZNF256Q9Y2P7 627 aaPredicted RBP10.51□□□□□ -0.73
USH1C-201ENST00000005226 SPATA25Q9BR10 227 aa10.51□□□□□ -0.73
USH1C-201ENST00000005226 DOPEY2Q9Y3R5 2298 aa10.5□□□□□ -0.73
USH1C-201ENST00000005226 IGIPA6NJ69 53 aa10.5□□□□□ -0.73
USH1C-201ENST00000005226 LINC01619G3V211 115 aa10.5□□□□□ -0.73
USH1C-201ENST00000005226 C19orf84I3L1E1 186 aa10.5□□□□□ -0.73
USH1C-201ENST00000005226 CD7P09564 240 aa10.5□□□□□ -0.73
USH1C-201ENST00000005226 CLEC2AQ6UVW9 174 aa10.5□□□□□ -0.73
USH1C-201ENST00000005226 ZNRF2Q8NHG8 242 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms