RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 C17orf112F2Z3M2 114 aa12.99□□□□□ -0.33
CLN3-262ENST00000637699 FAM159AQ6UWV7 190 aa12.99□□□□□ -0.33
CLN3-262ENST00000637699 Q8N814 137 aa12.99□□□□□ -0.33
CLN3-262ENST00000637699 NHLRC2Q8NBF2 726 aa12.99□□□□□ -0.33
CLN3-262ENST00000637699 Q9HAA7 133 aa12.99□□□□□ -0.33
CLN3-262ENST00000637699 KCNIP2Q9NS61 270 aa12.99□□□□□ -0.33
CLN3-262ENST00000637699 TRAV4A0A0B4J268 109 aa12.98□□□□□ -0.33
CLN3-262ENST00000637699 PTTG1O95997 202 aa12.98□□□□□ -0.33
CLN3-262ENST00000637699 CSN1S1P47710 185 aa12.98□□□□□ -0.33
CLN3-262ENST00000637699 PPT1P50897 306 aa12.98□□□□□ -0.33
CLN3-262ENST00000637699 OR4C5Q8NGB2 326 aa12.98□□□□□ -0.33
CLN3-262ENST00000637699 FXYD5Q96DB9 178 aa12.98□□□□□ -0.33
CLN3-262ENST00000637699 PAXXQ9BUH6 204 aa12.98□□□□□ -0.33
CLN3-262ENST00000637699 NAGKQ9UJ70 344 aa12.98□□□□□ -0.33
CLN3-262ENST00000637699 TRGV11A0A075B6L2 103 aa12.97□□□□□ -0.33
CLN3-262ENST00000637699 RANP62826 216 aaKnown RBP12.97□□□□□ -0.33
CLN3-262ENST00000637699 FFAR4Q5NUL3 377 aa12.97□□□□□ -0.33
CLN3-262ENST00000637699 SCGB1C1Q8TD33 95 aa12.97□□□□□ -0.33
CLN3-262ENST00000637699 IGHV3-16A0A0C4DH30 117 aa12.96□□□□□ -0.33
CLN3-262ENST00000637699 IBA57-AS1B1ANH7 110 aa12.96□□□□□ -0.33
CLN3-262ENST00000637699 Q6AWC8 147 aa12.96□□□□□ -0.33
CLN3-262ENST00000637699 SH2D6Q7Z4S9 175 aa12.96□□□□□ -0.33
CLN3-262ENST00000637699 RBAKDNA6NC62 111 aa12.95□□□□□ -0.34
CLN3-262ENST00000637699 GNRH2O43555 120 aa12.95□□□□□ -0.34
CLN3-262ENST00000637699 OR7C2O60412 319 aa12.95□□□□□ -0.34
CLN3-262ENST00000637699 EIF3GO75821 320 aaKnown RBP eCLIP12.95□□□□□ -0.34
CLN3-262ENST00000637699 LINC01556Q5JQF7 62 aa12.95□□□□□ -0.34
CLN3-262ENST00000637699 M0R2P5 195 aa12.94□□□□□ -0.34
CLN3-262ENST00000637699 TIRAPP58753 221 aa12.94□□□□□ -0.34
CLN3-262ENST00000637699 MED28Q9H204 178 aa12.94□□□□□ -0.34
CLN3-262ENST00000637699 TRAV8-6A0A0B4J262 113 aa12.93□□□□□ -0.34
CLN3-262ENST00000637699 IGHV3-30P01768 117 aa12.93□□□□□ -0.34
CLN3-262ENST00000637699 IGHV3-33P01772 117 aa12.93□□□□□ -0.34
CLN3-262ENST00000637699 PLA2G1BP04054 148 aaKnown RBP12.93□□□□□ -0.34
CLN3-262ENST00000637699 IGHV3-30-3P0DP02 117 aa12.93□□□□□ -0.34
CLN3-262ENST00000637699 IGHV3-30-5P0DP03 117 aa12.93□□□□□ -0.34
CLN3-262ENST00000637699 UBE2L3P68036 154 aaKnown RBP12.93□□□□□ -0.34
CLN3-262ENST00000637699 OR10J3Q5JRS4 329 aa12.93□□□□□ -0.34
CLN3-262ENST00000637699 GATA1P15976 413 aaPredicted RBP12.92□□□□□ -0.34
CLN3-262ENST00000637699 Q5BKY6 102 aa12.92□□□□□ -0.34
CLN3-262ENST00000637699 LENEPQ9Y5L5 61 aa12.92□□□□□ -0.34
CLN3-262ENST00000637699 DIRC3C9JPN6 131 aa12.91□□□□□ -0.34
CLN3-262ENST00000637699 TDRG1Q3Y452 100 aa12.91□□□□□ -0.34
CLN3-262ENST00000637699 HYLS1Q96M11 299 aa12.91□□□□□ -0.34
CLN3-262ENST00000637699 KRTAP29-1A8MX34 341 aaPredicted RBP12.9□□□□□ -0.34
CLN3-262ENST00000637699 C1QBP02746 253 aa12.9□□□□□ -0.34
CLN3-262ENST00000637699 PFN1P07737 140 aaKnown RBP12.9□□□□□ -0.34
CLN3-262ENST00000637699 KHDC3LQ587J8 217 aa12.9□□□□□ -0.34
CLN3-262ENST00000637699 LINC00528Q8N1L1 170 aa12.9□□□□□ -0.34
CLN3-262ENST00000637699 TAS2R45P59539 299 aa12.89□□□□□ -0.35
CLN3-262ENST00000637699 RAB2AP61019 212 aa12.89□□□□□ -0.35
CLN3-262ENST00000637699 WFDC2Q14508 124 aa12.89□□□□□ -0.35
CLN3-262ENST00000637699 SLC25A29Q8N8R3 303 aa12.89□□□□□ -0.35
CLN3-262ENST00000637699 RPH3ALQ9UNE2 315 aa12.89□□□□□ -0.35
CLN3-262ENST00000637699 HMCN2Q8NDA2 5059 aa12.89□□□□□ -0.35
CLN3-262ENST00000637699 FBLL1A6NHQ2 334 aaKnown RBP12.88□□□□□ -0.35
CLN3-262ENST00000637699 TYMSP04818 313 aa12.88□□□□□ -0.35
CLN3-262ENST00000637699 ACOT6Q3I5F7 207 aaPredicted RBP12.88□□□□□ -0.35
CLN3-262ENST00000637699 AQP10Q96PS8 301 aa12.88□□□□□ -0.35
CLN3-262ENST00000637699 LRP1Q07954 4544 aaKnown RBP12.87□□□□□ -0.35
CLN3-262ENST00000637699 UBR4Q5T4S7 5183 aa12.87□□□□□ -0.35
CLN3-262ENST00000637699 TRAV21A0A0B4J279 112 aa12.87□□□□□ -0.35
CLN3-262ENST00000637699 F6UZH7 168 aa12.87□□□□□ -0.35
CLN3-262ENST00000637699 HMGB3O15347 200 aaKnown RBP12.87□□□□□ -0.35
CLN3-262ENST00000637699 DEFB104AQ8WTQ1 72 aa12.87□□□□□ -0.35
CLN3-262ENST00000637699 TMED6Q8WW62 240 aa12.87□□□□□ -0.35
CLN3-262ENST00000637699 PRADC1Q9BSG0 188 aa12.87□□□□□ -0.35
CLN3-262ENST00000637699 SDF2L1Q9HCN8 221 aa12.87□□□□□ -0.35
CLN3-262ENST00000637699 BOLA1Q9Y3E2 137 aa12.87□□□□□ -0.35
CLN3-262ENST00000637699 IGHV3-73A0A0B4J1V6 119 aa12.86□□□□□ -0.35
CLN3-262ENST00000637699 LECT2O14960 151 aa12.86□□□□□ -0.35
CLN3-262ENST00000637699 GIPP09681 153 aaPredicted RBP12.86□□□□□ -0.35
CLN3-262ENST00000637699 LELP1Q5T871 98 aa12.86□□□□□ -0.35
CLN3-262ENST00000637699 Q6ZSA8 131 aa12.86□□□□□ -0.35
CLN3-262ENST00000637699 HSD17B11Q8NBQ5 300 aa12.86□□□□□ -0.35
CLN3-262ENST00000637699 OR10G9Q8NGN4 311 aa12.86□□□□□ -0.35
CLN3-262ENST00000637699 OR10G7Q8NGN6 311 aa12.86□□□□□ -0.35
CLN3-262ENST00000637699 TM2D2Q9BX73 214 aa12.86□□□□□ -0.35
CLN3-262ENST00000637699 A0A1W2PPV4 95 aa12.85□□□□□ -0.35
CLN3-262ENST00000637699 PGPA6NDG6 321 aa12.85□□□□□ -0.35
CLN3-262ENST00000637699 RHOHQ15669 191 aa12.85□□□□□ -0.35
CLN3-262ENST00000637699 ZNF876PQ49A33 203 aa12.85□□□□□ -0.35
CLN3-262ENST00000637699 CMTM2Q8TAZ6 248 aa12.85□□□□□ -0.35
CLN3-262ENST00000637699 TVP23CQ96ET8 276 aa12.85□□□□□ -0.35
CLN3-262ENST00000637699 OTORQ9NRC9 128 aa12.85□□□□□ -0.35
CLN3-262ENST00000637699 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.84□□□□□ -0.35
CLN3-262ENST00000637699 ATP6V0CP27449 155 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 LAGE3Q14657 143 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 CFAP126Q5VTH2 177 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 DPPA3Q6W0C5 159 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 PQLC2Q6ZP29 291 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 GOLT1AQ6ZVE7 132 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 Q8N3U1 123 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 OR2G3Q8NGZ4 309 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 ASB13Q8WXK3 278 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 KCNS1Q96KK3 526 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 TREM1Q9NP99 234 aa12.84□□□□□ -0.35
CLN3-262ENST00000637699 TRAV8-1A0A0A6YYK1 113 aa12.83□□□□□ -0.36
CLN3-262ENST00000637699 TRBV6-4A0A1B0GX49 114 aa12.83□□□□□ -0.36
CLN3-262ENST00000637699 RS1O15537 224 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms