RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 SDHAF1A6NFY7 115 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 LILRA6Q6PI73 481 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 A0A096LPF7 62 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 NDUFC2-KCTD14E9PQ53 114 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 LY6DQ14210 128 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 ODF1Q14990 250 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 ZNF525Q8N782 197 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 BTCP35070 178 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 KIAA0040Q15053 153 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 Q6ZVQ6 151 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 NRXN3Q9Y4C0 1643 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 WDR87Q6ZQQ6 2873 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 IGLV1-36A0A0B4J1U3 117 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 TEX49A0A1B0GTD5 131 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 PYGO2Q9BRQ0 406 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 A6NNC1 897 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 B5MCH6 92 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 PRSS46E5RG02 174 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST1H2BKO60814 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST1H2BJP06899 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST1H2BOP23527 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST1H2BBP33778 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST1H2BDP58876 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST1H2BCP62807 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HGFACQ04756 655 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST2H2BEQ16778 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST1H2BHQ93079 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST1H2BNQ99877 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 HIST1H2BMQ99879 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 SPTBN4Q9H254 2564 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 TRBV24-1A0A075B6N3 115 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 FAM231BA6NCW3 169 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 NTN3O00634 580 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-212ENST00000636194 FGF16O43320 207 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 H2BFSP57053 126 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 ZCCHC24Q8N2G6 241 aaKnown RBP4.86□□□□□ -1.63
SCN1A-212ENST00000636194 IGHV2-70DA0A0C4DH43 119 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 PAX9P55771 341 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 TNFRSF12AQ9NP84 129 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 A0A0B4J2C4 111 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 C9orf118A6NHY6 69 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 Q0VG73 95 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 C2orf66Q6UXQ4 117 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 Q8N1Y9 231 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 OCC1Q8TAD7 63 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 MRPL53Q96EL3 112 aaKnown RBP4.86□□□□□ -1.63
SCN1A-212ENST00000636194 KLHDC3Q9BQ90 382 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 X6R8D5 127 aa4.86□□□□□ -1.63
SCN1A-212ENST00000636194 C1QL4Q86Z23 238 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 ARMS2P0C7Q2 107 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 CEND1Q8N111 149 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 GAFA1Q96PS6 74 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 ZNF706Q9Y5V0 76 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-212ENST00000636194 F8VRH5 84 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 TMEM200BQ69YZ2 307 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 GFI1Q99684 422 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 Q8N8P6 123 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 LYRM9A8MSI8 78 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 F8W735 103 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-212ENST00000636194 IGKV1D-16P01601 117 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 ODF3L1Q8IXM7 274 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 C9orf85Q96MD7 179 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 Q96MF0 132 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 C20orf78Q9BR46 151 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 HIST2H2BCQ6DN03 193 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 FOXI2Q6ZQN5 318 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 IGKV3D-7A0A0C4DH55 119 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 SLC22A18ASQ8N1D0 253 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 C18orf12Q96KH6 178 aa4.85□□□□□ -1.63
SCN1A-212ENST00000636194 TRAV1-1A0A0B4J248 108 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 FAM236AA0A1B0GUQ0 79 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 FAM236BA0A1B0GV22 79 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 PLA2G10O15496 165 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 UNQ6494/PRO21346Q6UXR6 183 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 RNF138Q8WVD3 245 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 CHCHD2Q9Y6H1 151 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-212ENST00000636194 DIRC1Q969H9 104 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 NOP10Q9NPE3 64 aaKnown RBP4.84□□□□□ -1.63
SCN1A-212ENST00000636194 NRXN2Q9P2S2 1712 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 J3QQQ9 107 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 OVOL3O00110 214 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 FAM231DQ6ZW35 169 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 Q8TAT8 98 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 IGHV4-61A0A0C4DH41 118 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 TCRBV5S1A1TA0A578 114 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 H0YIZ8 118 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 NDUFC1O43677 76 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 CTRLP40313 264 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 FOXF2Q12947 444 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 BRD3OSQ6XYD6 125 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 AGMATQ9BSE5 352 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 DEPPQ9NTK1 212 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 SETD2Q9BYW2 2564 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-212ENST00000636194 PYY3Q5JQD4 70 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 LINC00479Q96M42 142 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 SLX1AQ9BQ83 275 aa4.84□□□□□ -1.63
SCN1A-212ENST00000636194 RAMP1O60894 148 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 SERTAD4-AS1Q5TG53 156 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 WFDC10BQ8IUB3 73 aa4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms