RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 LENEPQ9Y5L5 61 aa9.16□□□□□ -0.94
PNKP-217ENST00000625216 V9GYV3 84 aa9.16□□□□□ -0.94
PNKP-217ENST00000625216 HLA-DRB4X5D2U9 266 aa9.16□□□□□ -0.94
PNKP-217ENST00000625216 H3BMM0 161 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 SH2D1AO60880 128 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 DUSP14O95147 198 aaKnown RBP9.15□□□□□ -0.94
PNKP-217ENST00000625216 IGKV3-20P01619 116 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 CRISP2P16562 243 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 ERVFC1-1P60608 527 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 KIR3DS1Q14943 382 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 SMUG1Q53HV7 270 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 AMTNQ6UX39 209 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 CSNK1G2-AS1Q8NCQ2 148 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 NUDT10Q8NFP7 164 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 LINC00476Q8WZB0 136 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 NUDT11Q96G61 164 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 ODF3Q96PU9 254 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 CTDSP1Q9GZU7 261 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 BIN3Q9NQY0 253 aa9.15□□□□□ -0.94
PNKP-217ENST00000625216 TRBV7-9A0A0J9YWB2 115 aa9.14□□□□□ -0.95
PNKP-217ENST00000625216 J3KRW8 73 aa9.14□□□□□ -0.95
PNKP-217ENST00000625216 PPP1R2P9O14990 202 aa9.14□□□□□ -0.95
PNKP-217ENST00000625216 GATCO43716 136 aaKnown RBP9.14□□□□□ -0.95
PNKP-217ENST00000625216 BTN1A1Q13410 526 aa9.14□□□□□ -0.95
PNKP-217ENST00000625216 Q6ZQT7 251 aa9.14□□□□□ -0.95
PNKP-217ENST00000625216 C15orf54Q8N8G6 183 aa9.14□□□□□ -0.95
PNKP-217ENST00000625216 Q8NAQ8 132 aa9.14□□□□□ -0.95
PNKP-217ENST00000625216 OR4B1Q8NGF8 309 aa9.14□□□□□ -0.95
PNKP-217ENST00000625216 CLUHP3Q96NS8 147 aa9.14□□□□□ -0.95
PNKP-217ENST00000625216 KLLNB2CW77 178 aa9.13□□□□□ -0.95
PNKP-217ENST00000625216 TCTAP57738 103 aa9.13□□□□□ -0.95
PNKP-217ENST00000625216 NANOS2P60321 138 aaKnown RBP9.13□□□□□ -0.95
PNKP-217ENST00000625216 RPL19P84098 196 aaKnown RBP9.13□□□□□ -0.95
PNKP-217ENST00000625216 YPEL4Q96NS1 127 aa9.13□□□□□ -0.95
PNKP-217ENST00000625216 RPP21Q9H633 154 aaKnown RBP9.13□□□□□ -0.95
PNKP-217ENST00000625216 SMCO4Q9NRQ5 59 aa9.13□□□□□ -0.95
PNKP-217ENST00000625216 TMEM242Q9NWH2 141 aa9.13□□□□□ -0.95
PNKP-217ENST00000625216 IGHV4-28A0A0C4DH34 117 aa9.12□□□□□ -0.95
PNKP-217ENST00000625216 ZNF705GA8MUZ8 300 aaPredicted RBP9.12□□□□□ -0.95
PNKP-217ENST00000625216 M0R2Z0 102 aa9.12□□□□□ -0.95
PNKP-217ENST00000625216 DEFB4AO15263 64 aa9.12□□□□□ -0.95
PNKP-217ENST00000625216 LY6G6CO95867 125 aa9.12□□□□□ -0.95
PNKP-217ENST00000625216 P01737 135 aa9.12□□□□□ -0.95
PNKP-217ENST00000625216 LEPP41159 167 aa9.12□□□□□ -0.95
PNKP-217ENST00000625216 FAM162BQ5T6X4 162 aa9.12□□□□□ -0.95
PNKP-217ENST00000625216 C11orf21Q9P2W6 132 aa9.12□□□□□ -0.95
PNKP-217ENST00000625216 X6R8D5 127 aa9.12□□□□□ -0.95
PNKP-217ENST00000625216 EPPK1P58107 5090 aaKnown RBP9.12□□□□□ -0.95
PNKP-217ENST00000625216 PFN1P07737 140 aaKnown RBP9.11□□□□□ -0.95
PNKP-217ENST00000625216 RBMY1A1P0DJD3 496 aaKnown RBP9.11□□□□□ -0.95
PNKP-217ENST00000625216 RBMY1CP0DJD4 496 aa9.11□□□□□ -0.95
PNKP-217ENST00000625216 FXYD7P58549 80 aa9.11□□□□□ -0.95
PNKP-217ENST00000625216 RBMY1FQ15415 496 aaKnown RBP9.11□□□□□ -0.95
PNKP-217ENST00000625216 SPINK13Q1W4C9 94 aa9.11□□□□□ -0.95
PNKP-217ENST00000625216 OR2D3Q8NGH3 330 aa9.11□□□□□ -0.95
PNKP-217ENST00000625216 DAZAP1Q96EP5 407 aaKnown RBP9.11□□□□□ -0.95
PNKP-217ENST00000625216 IL36BQ9NZH7 164 aa9.11□□□□□ -0.95
PNKP-217ENST00000625216 XCL2Q9UBD3 114 aa9.11□□□□□ -0.95
PNKP-217ENST00000625216 URGCP-MRPS24S4R325 110 aa9.11□□□□□ -0.95
PNKP-217ENST00000625216 TRAV12-2A0A075B6T6 113 aa9.1□□□□□ -0.95
PNKP-217ENST00000625216 FABP5P3A8MUU1 101 aa9.1□□□□□ -0.95
PNKP-217ENST00000625216 GPX1P07203 203 aa9.1□□□□□ -0.95
PNKP-217ENST00000625216 CT83Q5H943 113 aa9.1□□□□□ -0.95
PNKP-217ENST00000625216 GFI1BQ5VTD9 330 aa9.1□□□□□ -0.95
PNKP-217ENST00000625216 Q6AWC8 147 aa9.1□□□□□ -0.95
PNKP-217ENST00000625216 NEU1Q99519 415 aa9.1□□□□□ -0.95
PNKP-217ENST00000625216 C7orf71A4D174 169 aa9.09□□□□□ -0.95
PNKP-217ENST00000625216 SMIM9A6NGZ8 99 aa9.09□□□□□ -0.95
PNKP-217ENST00000625216 CRXO43186 299 aaPredicted RBP9.09□□□□□ -0.95
PNKP-217ENST00000625216 CXCL1P09341 107 aa9.09□□□□□ -0.95
PNKP-217ENST00000625216 GZMBP10144 247 aa9.09□□□□□ -0.95
PNKP-217ENST00000625216 RNASE4P34096 147 aaKnown RBP9.09□□□□□ -0.95
PNKP-217ENST00000625216 CDKN1BP46527 198 aa9.09□□□□□ -0.95
PNKP-217ENST00000625216 TCL1AP56279 114 aa9.09□□□□□ -0.95
PNKP-217ENST00000625216 ELOBQ15370 118 aa9.09□□□□□ -0.95
PNKP-217ENST00000625216 LINC01559Q495D7 138 aa9.09□□□□□ -0.95
PNKP-217ENST00000625216 LGALS9CQ6DKI2 356 aa9.09□□□□□ -0.95
PNKP-217ENST00000625216 TMSB15BA0A087X1C1 80 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 TGIF2-C20orf24A0A0A6YYL0 155 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 TRAV21A0A0B4J279 112 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 IGKV3D-20A0A0C4DH25 116 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 SMIM27A0A1W2PRY6 76 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 TMEM189A5PLL7 270 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 TSPOP30536 169 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 FAM3BP58499 235 aaPredicted RBP9.08□□□□□ -0.96
PNKP-217ENST00000625216 ZNF705AQ6ZN79 300 aaPredicted RBP9.08□□□□□ -0.96
PNKP-217ENST00000625216 ZNF575Q86XF7 245 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.08□□□□□ -0.96
PNKP-217ENST00000625216 TSKUQ8WUA8 353 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 IMMP2LQ96T52 175 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 BIRC6Q9NR09 4857 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 VPS13DQ5THJ4 4388 aa9.08□□□□□ -0.96
PNKP-217ENST00000625216 TRAV10A0A0B4J240 114 aa9.07□□□□□ -0.96
PNKP-217ENST00000625216 TRAV12-3A0A0B4J271 114 aa9.07□□□□□ -0.96
PNKP-217ENST00000625216 A0A1W2PPQ1 181 aa9.07□□□□□ -0.96
PNKP-217ENST00000625216 COLCA2A8K830 154 aa9.07□□□□□ -0.96
PNKP-217ENST00000625216 A8MWL6 223 aa9.07□□□□□ -0.96
PNKP-217ENST00000625216 ZNF324O75467 553 aaPredicted RBP9.07□□□□□ -0.96
PNKP-217ENST00000625216 S100PP25815 95 aa9.07□□□□□ -0.96
PNKP-217ENST00000625216 GTSF1Q8WW33 167 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms