RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MRPL51Q4U2R6 128 aaKnown RBP8.08□□□□□ -1.12
CUX1-221ENST00000622516 FAM104BQ5XKR9 115 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 STPG4Q8N801 248 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 RHPN1-AS1Q9BWJ2 59 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 NDUFA4O00483 81 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 IGLV1-40P01703 118 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 CRYBA4P53673 196 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 DSCR9P59020 149 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 Q6AWC8 147 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 COX8CQ7Z4L0 72 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 USMG5Q96IX5 58 aa8.08□□□□□ -1.12
CUX1-221ENST00000622516 IGLC6P0CF74 106 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 PRELID3AQ96N28 172 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 PGPEP1Q9NXJ5 209 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 GATA1P15976 413 aaPredicted RBP8.07□□□□□ -1.12
CUX1-221ENST00000622516 CKS2P33552 79 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 CHCHD1Q96BP2 118 aaKnown RBP8.07□□□□□ -1.12
CUX1-221ENST00000622516 TMEM70Q9BUB7 260 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 CST9LQ9H4G1 147 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 AP5S1Q9NUS5 200 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 NOTCH3Q9UM47 2321 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 EVI2AP22794 236 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 CTRLP40313 264 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 ZNF493Q6ZR52 646 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 OR10AG1Q8NH19 301 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 SIGLEC8Q9NYZ4 499 aa8.07□□□□□ -1.12
CUX1-221ENST00000622516 GATA3P23771 443 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 RIPPLY3P57055 190 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 HIST1H1AQ02539 215 aaPredicted RBP8.06□□□□□ -1.12
CUX1-221ENST00000622516 FA2HQ7L5A8 372 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 TMEM190Q8WZ59 177 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 K7ERU9 68 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 NPYP01303 97 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 CFHR3Q02985 330 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 ORMDL3Q8N138 153 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 PSMG3-AS1Q96PY0 264 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 PEF1Q9UBV8 284 aaKnown RBP8.06□□□□□ -1.12
CUX1-221ENST00000622516 COX11Q9Y6N1 276 aa8.06□□□□□ -1.12
CUX1-221ENST00000622516 A0A0G2JLM5 398 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 A0A1B0GW15 77 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 hDV102S1A0JD36 115 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 RBAKDNA6NC62 111 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 SYS1-DBNDD2H3BUS1 97 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 HOXA3O43365 443 aaPredicted RBP8.05□□□□□ -1.12
CUX1-221ENST00000622516 IGHV4-31P0DP07 118 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 IGLL1P15814 213 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 Q96MF0 132 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 TRAV26-1A0A087WT03 109 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 OR4C46A6NHA9 309 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 FBLL1A6NHQ2 334 aaKnown RBP8.05□□□□□ -1.12
CUX1-221ENST00000622516 TCTAP57738 103 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 LINC01559Q495D7 138 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 C9orf47Q6ZRZ4 202 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 DPF1Q92782 380 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 LAMTOR2Q9Y2Q5 125 aa8.05□□□□□ -1.12
CUX1-221ENST00000622516 TRAV26-2A0A0B4J265 109 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 IGHV7-4-1A0A0J9YVY3 117 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 PSMB8P28062 276 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 RPS20P60866 119 aaKnown RBP8.04□□□□□ -1.12
CUX1-221ENST00000622516 SAMD13Q5VXD3 122 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 Q6ZN92 141 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 C9orf139Q6ZV77 190 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 DAZ1Q9NQZ3 744 aaKnown RBP8.04□□□□□ -1.12
CUX1-221ENST00000622516 H3BVH4 76 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 SOCS3O14543 225 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 BRI3O95415 125 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 OR5AL1P0C617 328 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 IGLC3P0DOY3 106 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 HNRNPA3P51991 378 aaKnown RBP8.04□□□□□ -1.12
CUX1-221ENST00000622516 Q6ZVH6 145 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 GATD1Q8NB37 220 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 OR8A1Q8NGG7 326 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 RNF185Q96GF1 192 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 UFC1Q9Y3C8 167 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 A0A096LNJ9 63 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 H3BUA1 57 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 RNASE4P34096 147 aaKnown RBP8.04□□□□□ -1.12
CUX1-221ENST00000622516 DEFB113Q30KQ7 82 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 UQCR10Q9UDW1 63 aa8.04□□□□□ -1.12
CUX1-221ENST00000622516 IGKV3-20P01619 116 aa8.03□□□□□ -1.12
CUX1-221ENST00000622516 OR10J6PQ8NGY7 276 aa8.03□□□□□ -1.12
CUX1-221ENST00000622516 MAP1LC3CQ9BXW4 147 aa8.03□□□□□ -1.12
CUX1-221ENST00000622516 HECTD1Q9ULT8 2610 aa8.03□□□□□ -1.12
CUX1-221ENST00000622516 TRAV9-2A0A087WT02 112 aa8.03□□□□□ -1.12
CUX1-221ENST00000622516 CITED1Q99966 193 aa8.03□□□□□ -1.12
CUX1-221ENST00000622516 TMEM191AQ9H0A3 160 aa8.03□□□□□ -1.12
CUX1-221ENST00000622516 SYNJ2BPP57105 145 aa8.02□□□□□ -1.13
CUX1-221ENST00000622516 DEFB136Q30KP8 78 aa8.02□□□□□ -1.13
CUX1-221ENST00000622516 C18orf65Q6ZTR6 163 aa8.02□□□□□ -1.13
CUX1-221ENST00000622516 ZFAND2AQ8N6M9 145 aa8.02□□□□□ -1.13
CUX1-221ENST00000622516 M0R381 172 aa8.02□□□□□ -1.13
CUX1-221ENST00000622516 SCGB1A1P11684 91 aa8.02□□□□□ -1.13
CUX1-221ENST00000622516 SPANXN1Q5VSR9 72 aa8.02□□□□□ -1.13
CUX1-221ENST00000622516 VPREB3Q9UKI3 123 aa8.02□□□□□ -1.13
CUX1-221ENST00000622516 U3KQK5 164 aa8.02□□□□□ -1.13
CUX1-221ENST00000622516 GNRH2O43555 120 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 HINT1P49773 126 aaPredicted RBP8.01□□□□□ -1.13
CUX1-221ENST00000622516 VAMP3Q15836 100 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 MRPL53Q96EL3 112 aaKnown RBP8.01□□□□□ -1.13
CUX1-221ENST00000622516 C18orf15Q96N68 181 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms