RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SUMO2P61956 95 aaKnown RBP9.77□□□□□ -0.85
LIG1-221ENST00000613670 A0A087WWL8 130 aa9.77□□□□□ -0.85
LIG1-221ENST00000613670 NDUFS8O00217 210 aa9.77□□□□□ -0.85
LIG1-221ENST00000613670 CD7P09564 240 aa9.77□□□□□ -0.85
LIG1-221ENST00000613670 KHDC1LQ5JSQ8 128 aa9.77□□□□□ -0.85
LIG1-221ENST00000613670 TRBV6-1A0A0K0K1D8 114 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 IGLL5B9A064 214 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 TMEM190Q8WZ59 177 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 PRADC1Q9BSG0 188 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 NACAE9PAV3 2078 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 IGHV7-81A0A0B4J1V7 117 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 MRGPRG-AS1Q2M3A8 158 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 SMIM2Q9BVW6 85 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 F6UB75 175 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 F8VRH5 84 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 FGF6P10767 208 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 DPH3P1Q9H4G8 78 aa9.76□□□□□ -0.85
LIG1-221ENST00000613670 LINC01559Q495D7 138 aa9.75□□□□□ -0.85
LIG1-221ENST00000613670 RPL39LQ96EH5 51 aaKnown RBP9.75□□□□□ -0.85
LIG1-221ENST00000613670 PTPN13Q12923 2485 aa9.75□□□□□ -0.85
LIG1-221ENST00000613670 A0A087WX48 190 aa9.75□□□□□ -0.85
LIG1-221ENST00000613670 HLA-DRB4P13762 266 aa9.75□□□□□ -0.85
LIG1-221ENST00000613670 HLA-DRB4X5D2U9 266 aa9.75□□□□□ -0.85
LIG1-221ENST00000613670 TRAV41A0A0B4J266 112 aa9.75□□□□□ -0.85
LIG1-221ENST00000613670 MYMXA0A1B0GTQ4 84 aa9.75□□□□□ -0.85
LIG1-221ENST00000613670 BUB3O43684 328 aa9.75□□□□□ -0.85
LIG1-221ENST00000613670 AGRNO00468 2067 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 MYO9AB2RTY4 2548 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 IGLC6P0CF74 106 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 MINOS1Q5TGZ0 78 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 OR11H6Q8NGC7 330 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 FAM110DQ8TAY7 271 aaPredicted RBP9.74□□□□□ -0.85
LIG1-221ENST00000613670 MINOS1-NBL1R4GNA1 71 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 WNK1Q9H4A3 2382 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 LOC400499M0QZD8 3231 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 TRAV2A0A0B4J234 112 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 IGKV3D-20A0A0C4DH25 116 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 KLHL30-AS1Q8NEE0 82 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 F8W1H4 67 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 ANXA2RQ3ZCQ2 193 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 MAPKAPK5-AS1Q8N8E1 139 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 DLX4Q92988 240 aaPredicted RBP9.74□□□□□ -0.85
LIG1-221ENST00000613670 RAX2Q96IS3 184 aa9.74□□□□□ -0.85
LIG1-221ENST00000613670 CKS1BP61024 79 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 NPBQ8NG41 125 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 SPOCK3Q9BQ16 436 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 ID1P41134 155 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 FOXI2Q6ZQN5 318 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 TRAV12-3A0A0B4J271 114 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 GNRH2O43555 120 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 C9orf139Q6ZV77 190 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 RNF185Q96GF1 192 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 SMAD5-AS1Q9Y6J3 95 aa9.73□□□□□ -0.85
LIG1-221ENST00000613670 PRSS29PA6NIE9 313 aa9.72□□□□□ -0.85
LIG1-221ENST00000613670 BPESC1Q9GZL8 116 aa9.72□□□□□ -0.85
LIG1-221ENST00000613670 TP53TG1Q9Y2A0 90 aa9.72□□□□□ -0.85
LIG1-221ENST00000613670 OOSP1A8MZH6 123 aa9.72□□□□□ -0.85
LIG1-221ENST00000613670 RRN3P1Q2M238 152 aa9.72□□□□□ -0.85
LIG1-221ENST00000613670 Q6ZQT7 251 aa9.72□□□□□ -0.85
LIG1-221ENST00000613670 SYT8Q8NBV8 401 aa9.72□□□□□ -0.85
LIG1-221ENST00000613670 LINC01548A6NM66 108 aa9.71□□□□□ -0.85
LIG1-221ENST00000613670 Q8NA96 180 aa9.71□□□□□ -0.85
LIG1-221ENST00000613670 U3KQK5 164 aa9.71□□□□□ -0.85
LIG1-221ENST00000613670 Q8N9W7 124 aa9.71□□□□□ -0.86
LIG1-221ENST00000613670 CHD8Q9HCK8 2581 aa9.71□□□□□ -0.86
LIG1-221ENST00000613670 TRBV7-1A0A0A6YYK4 115 aa9.71□□□□□ -0.86
LIG1-221ENST00000613670 PPP1R17O96001 155 aa9.71□□□□□ -0.86
LIG1-221ENST00000613670 IGF1P05019 195 aa9.71□□□□□ -0.86
LIG1-221ENST00000613670 MRAP2Q96G30 205 aa9.71□□□□□ -0.86
LIG1-221ENST00000613670 LINC00477Q96M19 166 aa9.71□□□□□ -0.86
LIG1-221ENST00000613670 HIGD1BQ9P298 99 aa9.71□□□□□ -0.86
LIG1-221ENST00000613670 TRAV8-2A0A0B4J237 113 aa9.7□□□□□ -0.86
LIG1-221ENST00000613670 OVOL1O14753 267 aa9.7□□□□□ -0.86
LIG1-221ENST00000613670 IGHV4-39P01824 125 aa9.7□□□□□ -0.86
LIG1-221ENST00000613670 SPINK8P0C7L1 97 aa9.7□□□□□ -0.86
LIG1-221ENST00000613670 ZNF688P0C7X2 276 aa9.7□□□□□ -0.86
LIG1-221ENST00000613670 DGAT2L7PQ6IED9 249 aa9.7□□□□□ -0.86
LIG1-221ENST00000613670 UFSP1Q6NVU6 142 aa9.7□□□□□ -0.86
LIG1-221ENST00000613670 USP9YO00507 2555 aaPredicted RBP9.7□□□□□ -0.86
LIG1-221ENST00000613670 A8MWV9 139 aa9.7□□□□□ -0.86
LIG1-221ENST00000613670 TNFRSF13BO14836 293 aaPredicted RBP9.7□□□□□ -0.86
LIG1-221ENST00000613670 NPFFO15130 113 aa9.7□□□□□ -0.86
LIG1-221ENST00000613670 MRPS12O15235 138 aaKnown RBP9.69□□□□□ -0.86
LIG1-221ENST00000613670 ZFP36P26651 326 aaKnown RBP9.69□□□□□ -0.86
LIG1-221ENST00000613670 C11orf21Q9P2W6 132 aa9.69□□□□□ -0.86
LIG1-221ENST00000613670 LY6LH3BQJ8 138 aa9.69□□□□□ -0.86
LIG1-221ENST00000613670 OVOL3O00110 214 aa9.69□□□□□ -0.86
LIG1-221ENST00000613670 HOXB4P17483 251 aaPredicted RBP9.69□□□□□ -0.86
LIG1-221ENST00000613670 RHPN1-AS1Q9BWJ2 59 aa9.69□□□□□ -0.86
LIG1-221ENST00000613670 IGHV3-73A0A0B4J1V6 119 aa9.69□□□□□ -0.86
LIG1-221ENST00000613670 NPC2P61916 151 aa9.69□□□□□ -0.86
LIG1-221ENST00000613670 CLEC2AQ6UVW9 174 aa9.69□□□□□ -0.86
LIG1-221ENST00000613670 ADGRG4Q8IZF6 3080 aa9.68□□□□□ -0.86
LIG1-221ENST00000613670 SETD2Q9BYW2 2564 aaPredicted RBP9.68□□□□□ -0.86
LIG1-221ENST00000613670 DUSP14O95147 198 aaKnown RBP9.68□□□□□ -0.86
LIG1-221ENST00000613670 PTH2Q96A98 100 aa9.68□□□□□ -0.86
LIG1-221ENST00000613670 SPAG8Q99932 426 aaPredicted RBP9.68□□□□□ -0.86
LIG1-221ENST00000613670 UBE2E1P51965 193 aa9.67□□□□□ -0.86
LIG1-221ENST00000613670 TAL2Q16559 108 aa9.67□□□□□ -0.86
LIG1-221ENST00000613670 PAPPA-AS1Q5QFB9 102 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms