RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 NUDT3O95989 172 aa13.65□□□□□ -0.22
UPF1-212ENST00000601689 PFN1P07737 140 aaKnown RBP13.65□□□□□ -0.22
UPF1-212ENST00000601689 POM121L12Q8N7R1 296 aa13.65□□□□□ -0.22
UPF1-212ENST00000601689 TVP23CQ96ET8 276 aa13.65□□□□□ -0.22
UPF1-212ENST00000601689 FMC1Q96HJ9 113 aa13.65□□□□□ -0.22
UPF1-212ENST00000601689 ZFP30Q9Y2G7 519 aa13.65□□□□□ -0.22
UPF1-212ENST00000601689 A0A1B0GV50 99 aa13.64□□□□□ -0.23
UPF1-212ENST00000601689 PAGE4O60829 102 aa13.64□□□□□ -0.23
UPF1-212ENST00000601689 AKR1C3P42330 323 aa13.64□□□□□ -0.23
UPF1-212ENST00000601689 SLAQ13239 276 aa13.64□□□□□ -0.23
UPF1-212ENST00000601689 TRAV34A0A0B4J273 112 aa13.63□□□□□ -0.23
UPF1-212ENST00000601689 S100A9P06702 114 aaKnown RBP13.63□□□□□ -0.23
UPF1-212ENST00000601689 RNF212Q495C1 297 aa13.63□□□□□ -0.23
UPF1-212ENST00000601689 Q6ZQT7 251 aa13.63□□□□□ -0.23
UPF1-212ENST00000601689 C8orf49Q96NF6 230 aa13.63□□□□□ -0.23
UPF1-212ENST00000601689 MANBALQ9NQG1 85 aa13.63□□□□□ -0.23
UPF1-212ENST00000601689 RYR2Q92736 4967 aa13.62□□□□□ -0.23
UPF1-212ENST00000601689 FABP5P3A8MUU1 101 aa13.62□□□□□ -0.23
UPF1-212ENST00000601689 IGLV2-11P01706 119 aa13.62□□□□□ -0.23
UPF1-212ENST00000601689 CCL18P55774 89 aa13.62□□□□□ -0.23
UPF1-212ENST00000601689 MDFICQ9P1T7 246 aa13.62□□□□□ -0.23
UPF1-212ENST00000601689 TRAV26-1A0A087WT03 109 aa13.61□□□□□ -0.23
UPF1-212ENST00000601689 H3BNG1 76 aa13.61□□□□□ -0.23
UPF1-212ENST00000601689 SULT1A2P50226 295 aa13.61□□□□□ -0.23
UPF1-212ENST00000601689 LINC00479Q96M42 142 aa13.61□□□□□ -0.23
UPF1-212ENST00000601689 MRPL16Q9NX20 251 aaKnown RBP13.61□□□□□ -0.23
UPF1-212ENST00000601689 DNAH1Q9P2D7 4330 aa13.6□□□□□ -0.23
UPF1-212ENST00000601689 M0R2P5 195 aa13.6□□□□□ -0.23
UPF1-212ENST00000601689 GNRH2O43555 120 aa13.6□□□□□ -0.23
UPF1-212ENST00000601689 IFNA1P01562 189 aa13.6□□□□□ -0.23
UPF1-212ENST00000601689 TYMSP04818 313 aa13.6□□□□□ -0.23
UPF1-212ENST00000601689 FAM3BP58499 235 aaPredicted RBP13.6□□□□□ -0.23
UPF1-212ENST00000601689 Q86TA4 180 aa13.6□□□□□ -0.23
UPF1-212ENST00000601689 TXNDC17Q9BRA2 123 aa13.6□□□□□ -0.23
UPF1-212ENST00000601689 S100A4P26447 101 aaKnown RBP13.59□□□□□ -0.23
UPF1-212ENST00000601689 RASL10AQ92737 203 aa13.59□□□□□ -0.23
UPF1-212ENST00000601689 GNG13Q9P2W3 67 aa13.59□□□□□ -0.23
UPF1-212ENST00000601689 HYDINQ4G0P3 5121 aa13.59□□□□□ -0.23
UPF1-212ENST00000601689 MUC4Q99102 2169 aa13.58□□□□□ -0.24
UPF1-212ENST00000601689 TRAV1-1A0A0B4J248 108 aa13.58□□□□□ -0.24
UPF1-212ENST00000601689 TRGV4A0A0C4DH28 118 aa13.58□□□□□ -0.24
UPF1-212ENST00000601689 IGHV3-16A0A0C4DH30 117 aa13.58□□□□□ -0.24
UPF1-212ENST00000601689 A0A0J9YY99 117 aa13.58□□□□□ -0.24
UPF1-212ENST00000601689 TRBV6-1A0A0K0K1D8 114 aa13.58□□□□□ -0.24
UPF1-212ENST00000601689 ZNF80P51504 273 aaPredicted RBP13.58□□□□□ -0.24
UPF1-212ENST00000601689 C9orf62Q8N4C0 152 aa13.57□□□□□ -0.24
UPF1-212ENST00000601689 PRO0255Q9UI72 69 aa13.57□□□□□ -0.24
UPF1-212ENST00000601689 PAX4O43316 350 aa13.56□□□□□ -0.24
UPF1-212ENST00000601689 IGHV3-53P01767 116 aa13.56□□□□□ -0.24
UPF1-212ENST00000601689 ORM1P02763 201 aa13.56□□□□□ -0.24
UPF1-212ENST00000601689 HOXA5P20719 270 aa13.56□□□□□ -0.24
UPF1-212ENST00000601689 FAM162BQ5T6X4 162 aa13.56□□□□□ -0.24
UPF1-212ENST00000601689 OR4C5Q8NGB2 326 aa13.56□□□□□ -0.24
UPF1-212ENST00000601689 NACAE9PAV3 2078 aa13.55□□□□□ -0.24
UPF1-212ENST00000601689 CIDEAO60543 219 aa13.55□□□□□ -0.24
UPF1-212ENST00000601689 TAGLN2P37802 199 aaKnown RBP13.55□□□□□ -0.24
UPF1-212ENST00000601689 HHLA3Q9XRX5 114 aa13.55□□□□□ -0.24
UPF1-212ENST00000601689 TRAV4A0A0B4J268 109 aa13.54□□□□□ -0.24
UPF1-212ENST00000601689 B4DEV8 164 aa13.54□□□□□ -0.24
UPF1-212ENST00000601689 LTAP01374 205 aa13.54□□□□□ -0.24
UPF1-212ENST00000601689 ASIPP42127 132 aa13.54□□□□□ -0.24
UPF1-212ENST00000601689 PCNPQ8WW12 178 aaKnown RBP13.54□□□□□ -0.24
UPF1-212ENST00000601689 SCO2A0A1W2PP80 73 aa13.53□□□□□ -0.24
UPF1-212ENST00000601689 C9JCJ5 164 aa13.53□□□□□ -0.24
UPF1-212ENST00000601689 BLOC1S1P78537 153 aa13.53□□□□□ -0.24
UPF1-212ENST00000601689 ZNF876PQ49A33 203 aa13.53□□□□□ -0.24
UPF1-212ENST00000601689 COX8CQ7Z4L0 72 aa13.53□□□□□ -0.24
UPF1-212ENST00000601689 BAGE2Q86Y30 109 aa13.53□□□□□ -0.24
UPF1-212ENST00000601689 ICOSQ9Y6W8 199 aa13.53□□□□□ -0.24
UPF1-212ENST00000601689 KMT2AQ03164 3969 aa13.53□□□□□ -0.24
UPF1-212ENST00000601689 PDE6DO43924 150 aa13.52□□□□□ -0.25
UPF1-212ENST00000601689 ZC2HC1AQ96GY0 325 aa13.52□□□□□ -0.25
UPF1-212ENST00000601689 MRPL23Q16540 153 aaKnown RBP13.51□□□□□ -0.25
UPF1-212ENST00000601689 SH2D1AO60880 128 aa13.5□□□□□ -0.25
UPF1-212ENST00000601689 SFTA3P0C7M3 94 aa13.5□□□□□ -0.25
UPF1-212ENST00000601689 CRYBA4P53673 196 aa13.5□□□□□ -0.25
UPF1-212ENST00000601689 CCL20P78556 96 aa13.5□□□□□ -0.25
UPF1-212ENST00000601689 MEF2BQ02080 365 aaPredicted RBP13.5□□□□□ -0.25
UPF1-212ENST00000601689 FHL2Q14192 279 aa13.5□□□□□ -0.25
UPF1-212ENST00000601689 ZNF674Q2M3X9 581 aa13.5□□□□□ -0.25
UPF1-212ENST00000601689 SYT8Q8NBV8 401 aa13.5□□□□□ -0.25
UPF1-212ENST00000601689 PTH2Q96A98 100 aa13.5□□□□□ -0.25
UPF1-212ENST00000601689 C11orf21Q9P2W6 132 aa13.5□□□□□ -0.25
UPF1-212ENST00000601689 IGKV3D-20A0A0C4DH25 116 aa13.49□□□□□ -0.25
UPF1-212ENST00000601689 A0A1B0GVG6 124 aa13.49□□□□□ -0.25
UPF1-212ENST00000601689 M0R036 132 aa13.49□□□□□ -0.25
UPF1-212ENST00000601689 SOHLH1Q5JUK2 328 aa13.49□□□□□ -0.25
UPF1-212ENST00000601689 ALKAL2Q6UX46 152 aa13.49□□□□□ -0.25
UPF1-212ENST00000601689 VSIG2Q96IQ7 327 aa13.49□□□□□ -0.25
UPF1-212ENST00000601689 ZNF479Q96JC4 524 aa13.49□□□□□ -0.25
UPF1-212ENST00000601689 C9orf85Q96MD7 179 aa13.49□□□□□ -0.25
UPF1-212ENST00000601689 VAX2Q9UIW0 290 aa13.49□□□□□ -0.25
UPF1-212ENST00000601689 IGLV2-18A0A075B6J9 118 aa13.48□□□□□ -0.25
UPF1-212ENST00000601689 M0R2N4 97 aa13.48□□□□□ -0.25
UPF1-212ENST00000601689 RPL35P42766 123 aaKnown RBP13.48□□□□□ -0.25
UPF1-212ENST00000601689 PIK3CD-AS1Q5SR53 167 aa13.48□□□□□ -0.25
UPF1-212ENST00000601689 IL36BQ9NZH7 164 aa13.48□□□□□ -0.25
UPF1-212ENST00000601689 A0A096LPF7 62 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 A8MWV9 139 aa13.47□□□□□ -0.25
UPF1-212ENST00000601689 KRBOX1C9JBD0 128 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms