RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 GAGE2EQ4V326 116 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 LGALS9CQ6DKI2 356 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 GAGE2DQ9UEU5 116 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 TRBV7-9A0A0J9YWB2 115 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 PDE6HQ13956 83 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 ZC2HC1BQ5TFG8 222 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 TMEM219Q86XT9 240 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 FGF6P10767 208 aa11.83□□□□□ -0.52
UPF1-204ENST00000596842 AGRNO00468 2067 aa11.83□□□□□ -0.52
UPF1-204ENST00000596842 LINC01548A6NM66 108 aa11.83□□□□□ -0.52
UPF1-204ENST00000596842 NDUFA3O95167 84 aa11.83□□□□□ -0.52
UPF1-204ENST00000596842 OR4X2Q8NGF9 303 aa11.83□□□□□ -0.52
UPF1-204ENST00000596842 RNF5Q99942 180 aa11.83□□□□□ -0.52
UPF1-204ENST00000596842 ZNF493Q6ZR52 646 aa11.83□□□□□ -0.52
UPF1-204ENST00000596842 C8orf86Q6ZUL3 223 aa11.83□□□□□ -0.52
UPF1-204ENST00000596842 VKORC1Q9BQB6 163 aa11.83□□□□□ -0.52
UPF1-204ENST00000596842 ZFHX3Q15911 3703 aa11.82□□□□□ -0.52
UPF1-204ENST00000596842 TRAV40A0A0B4J280 105 aa11.82□□□□□ -0.52
UPF1-204ENST00000596842 M0R381 172 aa11.82□□□□□ -0.52
UPF1-204ENST00000596842 ID1P41134 155 aa11.82□□□□□ -0.52
UPF1-204ENST00000596842 EFNA4P52798 201 aa11.82□□□□□ -0.52
UPF1-204ENST00000596842 DTX2Q86UW9 622 aa11.82□□□□□ -0.52
UPF1-204ENST00000596842 C1QTNF4Q9BXJ3 329 aa11.82□□□□□ -0.52
UPF1-204ENST00000596842 ATP6V0E1O15342 81 aa11.81□□□□□ -0.52
UPF1-204ENST00000596842 TMEM78Q5T7P6 136 aa11.81□□□□□ -0.52
UPF1-204ENST00000596842 IGF2-ASQ6U949 168 aa11.81□□□□□ -0.52
UPF1-204ENST00000596842 IGHV7-81A0A0B4J1V7 117 aa11.81□□□□□ -0.52
UPF1-204ENST00000596842 ZFP36P26651 326 aaKnown RBP11.81□□□□□ -0.52
UPF1-204ENST00000596842 TTC9CQ8N5M4 171 aa11.81□□□□□ -0.52
UPF1-204ENST00000596842 ZNF502Q8TBZ5 544 aa11.81□□□□□ -0.52
UPF1-204ENST00000596842 TMEM8BA6NDV4 472 aa11.8□□□□□ -0.52
UPF1-204ENST00000596842 SCGB1A1P11684 91 aa11.8□□□□□ -0.52
UPF1-204ENST00000596842 TCF15Q12870 199 aa11.8□□□□□ -0.52
UPF1-204ENST00000596842 MRPL23Q16540 153 aaKnown RBP11.8□□□□□ -0.52
UPF1-204ENST00000596842 NEGR1Q7Z3B1 354 aa11.8□□□□□ -0.52
UPF1-204ENST00000596842 CHAC1Q9BUX1 264 aa11.8□□□□□ -0.52
UPF1-204ENST00000596842 S100A4P26447 101 aaKnown RBP11.8□□□□□ -0.52
UPF1-204ENST00000596842 OR11H6Q8NGC7 330 aa11.8□□□□□ -0.52
UPF1-204ENST00000596842 AGPAT4-IT1Q9H0P7 198 aa11.79□□□□□ -0.52
UPF1-204ENST00000596842 TRBV6-1A0A0K0K1D8 114 aa11.79□□□□□ -0.52
UPF1-204ENST00000596842 IGKCP01834 107 aa11.79□□□□□ -0.52
UPF1-204ENST00000596842 IGHG4P01861 327 aa11.79□□□□□ -0.52
UPF1-204ENST00000596842 NPBQ8NG41 125 aa11.79□□□□□ -0.52
UPF1-204ENST00000596842 RNF185Q96GF1 192 aa11.79□□□□□ -0.52
UPF1-204ENST00000596842 C16orf92Q96LL3 132 aa11.79□□□□□ -0.52
UPF1-204ENST00000596842 MYOZ3Q8TDC0 251 aa11.79□□□□□ -0.52
UPF1-204ENST00000596842 MRPL35Q9NZE8 188 aaKnown RBP11.79□□□□□ -0.52
UPF1-204ENST00000596842 OR9G4Q8NGQ1 327 aa11.78□□□□□ -0.52
UPF1-204ENST00000596842 C11orf21Q9P2W6 132 aa11.78□□□□□ -0.52
UPF1-204ENST00000596842 MGPP08493 103 aa11.78□□□□□ -0.52
UPF1-204ENST00000596842 PGPEP1Q9NXJ5 209 aa11.78□□□□□ -0.52
UPF1-204ENST00000596842 IGKV3D-20A0A0C4DH25 116 aa11.77□□□□□ -0.52
UPF1-204ENST00000596842 IGF1P05019 195 aa11.77□□□□□ -0.52
UPF1-204ENST00000596842 IGLC6P0CF74 106 aa11.77□□□□□ -0.53
UPF1-204ENST00000596842 F8W1H4 67 aa11.77□□□□□ -0.53
UPF1-204ENST00000596842 IGHV3-11P01762 117 aa11.77□□□□□ -0.53
UPF1-204ENST00000596842 ODF1Q14990 250 aa11.77□□□□□ -0.53
UPF1-204ENST00000596842 USP9YO00507 2555 aaPredicted RBP11.77□□□□□ -0.53
UPF1-204ENST00000596842 CUBNO60494 3623 aa11.77□□□□□ -0.53
UPF1-204ENST00000596842 SRD5A1P18405 259 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 UFSP1Q6NVU6 142 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 LY6G5BQ8NDX9 201 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 U3KQK5 164 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 GAGE12JA6NER3 117 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 GAGE7O76087 117 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 GAGE12FP0CL80 117 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 GAGE12GP0CL81 117 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 GAGE12IP0CL82 117 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 SAA4P35542 130 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 GAGE4Q13068 117 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 BUB3O43684 328 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 Q8N9W7 124 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 METTL26Q96S19 204 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 NXT2Q9NPJ8 142 aaKnown RBP11.76□□□□□ -0.53
UPF1-204ENST00000596842 CENPEQ02224 2701 aa11.76□□□□□ -0.53
UPF1-204ENST00000596842 DPM2O94777 84 aa11.75□□□□□ -0.53
UPF1-204ENST00000596842 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.75□□□□□ -0.53
UPF1-204ENST00000596842 TRBV25-1A0A075B6N4 114 aa11.75□□□□□ -0.53
UPF1-204ENST00000596842 LY6EQ16553 131 aa11.75□□□□□ -0.53
UPF1-204ENST00000596842 SPANXB1Q9NS25 103 aaPredicted RBP11.75□□□□□ -0.53
UPF1-204ENST00000596842 MSRB2Q9Y3D2 182 aa11.75□□□□□ -0.53
UPF1-204ENST00000596842 KIR2DL4Q99706 377 aa11.74□□□□□ -0.53
UPF1-204ENST00000596842 PF4V1P10720 104 aa11.74□□□□□ -0.53
UPF1-204ENST00000596842 BRD3OSQ6XYD6 125 aa11.74□□□□□ -0.53
UPF1-204ENST00000596842 YAE1D1Q9NRH1 226 aa11.74□□□□□ -0.53
UPF1-204ENST00000596842 M0R1W7 72 aa11.74□□□□□ -0.53
UPF1-204ENST00000596842 MEIG1Q5JSS6 88 aa11.74□□□□□ -0.53
UPF1-204ENST00000596842 ODF3BA8MYP8 253 aa11.73□□□□□ -0.53
UPF1-204ENST00000596842 C14orf178Q8N769 122 aaPredicted RBP11.73□□□□□ -0.53
UPF1-204ENST00000596842 F6UB75 175 aa11.73□□□□□ -0.53
UPF1-204ENST00000596842 GATD1Q8NB37 220 aa11.73□□□□□ -0.53
UPF1-204ENST00000596842 HOXA3O43365 443 aaPredicted RBP11.73□□□□□ -0.53
UPF1-204ENST00000596842 RPL32P62910 135 aaKnown RBP11.73□□□□□ -0.53
UPF1-204ENST00000596842 CACNA1AO00555 2505 aa11.73□□□□□ -0.53
UPF1-204ENST00000596842 LAGE3Q14657 143 aa11.72□□□□□ -0.53
UPF1-204ENST00000596842 MAPKAPK5-AS1Q8N8E1 139 aa11.72□□□□□ -0.53
UPF1-204ENST00000596842 ATP5J2P56134 94 aa11.72□□□□□ -0.53
UPF1-204ENST00000596842 CCDC140Q96MF4 163 aa11.72□□□□□ -0.53
UPF1-204ENST00000596842 FOXI2Q6ZQN5 318 aa11.71□□□□□ -0.53
UPF1-204ENST00000596842 BPESC1Q9GZL8 116 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms