RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 MS4A6AQ9H2W1 248 aa7.68□□□□□ -1.18
LIG3-216ENST00000593099 PROP1O75360 226 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 EBI3Q14213 229 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 KIAA1644Q3SXP7 199 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 HAPLN4Q86UW8 402 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 TRGV1A0A0A0MS02 117 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 IGLV2-14P01704 120 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 PPIFP30405 207 aaKnown RBP7.67□□□□□ -1.18
LIG3-216ENST00000593099 HILS1P60008 231 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 RPL23P62829 140 aaKnown RBP7.67□□□□□ -1.18
LIG3-216ENST00000593099 UTF1Q5T230 341 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 C4orf3Q8WVX3 66 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 TMEM14CQ9P0S9 112 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 ADAMTS20P59510 1910 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 SEC61GP60059 68 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 C19orf54Q5BKX5 351 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 Q6ZSV7 163 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 RNF182Q8N6D2 247 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 OCC1Q8TAD7 63 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 RNASE7Q9H1E1 156 aaKnown RBP7.67□□□□□ -1.18
LIG3-216ENST00000593099 POLR3KQ9Y2Y1 108 aaPredicted RBP7.67□□□□□ -1.18
LIG3-216ENST00000593099 POLQO75417 2590 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 F2Z2F3 143 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 INS-IGF2F8WCM5 200 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 LY6LH3BQJ8 138 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 CTSGP08311 255 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 GP9P14770 177 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 IL15RAQ13261 267 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 ETDBQ3ZM63 59 aa7.67□□□□□ -1.18
LIG3-216ENST00000593099 IGHG4P01861 327 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 LGALS3P17931 250 aaKnown RBP7.66□□□□□ -1.18
LIG3-216ENST00000593099 CBLN1P23435 193 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 SHISA2Q6UWI4 295 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 MRPS16Q9Y3D3 137 aaKnown RBP7.66□□□□□ -1.18
LIG3-216ENST00000593099 HIGD1CA8MV81 97 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 SPINK13Q1W4C9 94 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 DLX4Q92988 240 aaPredicted RBP7.66□□□□□ -1.18
LIG3-216ENST00000593099 PTH2Q96A98 100 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 ZNF414Q96IQ9 312 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 ZMAT4Q9H898 229 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 COLCA2A8K830 154 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 IGKV1-17P01599 117 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 IGF1P05019 195 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 GFI1BQ5VTD9 330 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 NDUFA11Q86Y39 141 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 A0A087WWC5 75 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 KNCNA6PVL3 124 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 CD28P10747 220 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 PAPPA-AS1Q5QFB9 102 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 Q6ZPA2 131 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 GPHB5Q86YW7 130 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 SMR3AQ99954 134 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 EXPH5Q8NEV8 1989 aa7.66□□□□□ -1.18
LIG3-216ENST00000593099 ERCC8Q13216 396 aa7.65□□□□□ -1.18
LIG3-216ENST00000593099 PRR20EP86478 221 aa7.65□□□□□ -1.18
LIG3-216ENST00000593099 PRR20CP86479 221 aa7.65□□□□□ -1.18
LIG3-216ENST00000593099 PRR20DP86480 221 aa7.65□□□□□ -1.18
LIG3-216ENST00000593099 PRR20BP86481 221 aa7.65□□□□□ -1.18
LIG3-216ENST00000593099 PRR20AP86496 221 aa7.65□□□□□ -1.18
LIG3-216ENST00000593099 SPATA25Q9BR10 227 aa7.65□□□□□ -1.18
LIG3-216ENST00000593099 PRADC1Q9BSG0 188 aa7.65□□□□□ -1.18
LIG3-216ENST00000593099 K7EMT4 169 aa7.65□□□□□ -1.19
LIG3-216ENST00000593099 TMEM170AQ8WVE7 144 aa7.65□□□□□ -1.19
LIG3-216ENST00000593099 PPDPFLQ8WWR9 84 aa7.65□□□□□ -1.19
LIG3-216ENST00000593099 INSL3P51460 131 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 ARHGAP32A7KAX9 2087 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 CPAMD8Q8IZJ3 1885 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 IZUMO1RA6ND01 250 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 SERF1AO75920 110 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 GZMBP10144 247 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 UBE2DNLQ8IWF7 75 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 PRELID3AQ96N28 172 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 MTORP42345 2549 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 C2orf70A6NJV1 201 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 AVPP01185 164 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 PPBPP02775 128 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 C20orf144Q9BQM9 153 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 SLC25A2Q9BXI2 301 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 TNCP24821 2201 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 LAMA3Q16787 3333 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 TRAV9-1A0A075B6T8 112 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 IGKV3OR2-268A0A0C4DH90 116 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 LINC01548A6NM66 108 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 CRLF1O75462 422 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 DEFB130BP0DP73 79 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 DEFB130AP0DP74 79 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 FOXI2Q6ZQN5 318 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 FANCD2OSQ96PS1 177 aa7.64□□□□□ -1.19
LIG3-216ENST00000593099 SH2D1AO60880 128 aa7.63□□□□□ -1.19
LIG3-216ENST00000593099 TRAV25A0A0B4J276 109 aa7.63□□□□□ -1.19
LIG3-216ENST00000593099 E7EUB6 86 aa7.63□□□□□ -1.19
LIG3-216ENST00000593099 M0QXV9 152 aa7.63□□□□□ -1.19
LIG3-216ENST00000593099 KIR3DS1Q14943 382 aa7.63□□□□□ -1.19
LIG3-216ENST00000593099 Q86TA4 180 aa7.63□□□□□ -1.19
LIG3-216ENST00000593099 TSKUQ8WUA8 353 aa7.63□□□□□ -1.19
LIG3-216ENST00000593099 A0A1B0GW64 132 aa7.63□□□□□ -1.19
LIG3-216ENST00000593099 FAM231BA6NCW3 169 aa7.63□□□□□ -1.19
LIG3-216ENST00000593099 FOXA3P55318 350 aaPredicted RBP7.63□□□□□ -1.19
LIG3-216ENST00000593099 LSM4Q9Y4Z0 139 aaKnown RBP7.63□□□□□ -1.19
LIG3-216ENST00000593099 ORMDL3Q8N138 153 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms