RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FHL3Q13643 280 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 RNASEKQ6P5S7 137 aaKnown RBP10.63□□□□□ -0.71
LIG3-205ENST00000585941 FOXI2Q6ZQN5 318 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 ORMDL3Q8N138 153 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 DLX4Q92988 240 aaPredicted RBP10.63□□□□□ -0.71
LIG3-205ENST00000585941 GSN-AS1Q9NRJ2 163 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 CSN3P07498 182 aa10.62□□□□□ -0.71
LIG3-205ENST00000585941 Q6ZWC4 215 aa10.62□□□□□ -0.71
LIG3-205ENST00000585941 DYNLRB2Q8TF09 96 aa10.62□□□□□ -0.71
LIG3-205ENST00000585941 SELENOKQ9Y6D0 94 aa10.62□□□□□ -0.71
LIG3-205ENST00000585941 AKAP9Q99996 3911 aa10.62□□□□□ -0.71
LIG3-205ENST00000585941 MTORP42345 2549 aa10.61□□□□□ -0.71
LIG3-205ENST00000585941 J3KRW8 73 aa10.61□□□□□ -0.71
LIG3-205ENST00000585941 SCGB1D1O95968 90 aa10.61□□□□□ -0.71
LIG3-205ENST00000585941 LINC00614P0C842 121 aa10.61□□□□□ -0.71
LIG3-205ENST00000585941 ASIPP42127 132 aa10.61□□□□□ -0.71
LIG3-205ENST00000585941 AMN1Q8IY45 258 aa10.61□□□□□ -0.71
LIG3-205ENST00000585941 NAGKQ9UJ70 344 aa10.61□□□□□ -0.71
LIG3-205ENST00000585941 LAMTOR2Q9Y2Q5 125 aa10.61□□□□□ -0.71
LIG3-205ENST00000585941 TRAV25A0A0B4J276 109 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 MUC21A0A0G2JKD1 596 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 MUC21A0A140T8X8 626 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 CCL24O00175 119 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 CD28P10747 220 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 MRPL51Q4U2R6 128 aaKnown RBP10.6□□□□□ -0.71
LIG3-205ENST00000585941 MUC21Q5SSG8 566 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 SPANXN1Q5VSR9 72 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 RAX2Q96IS3 184 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 PRELID3AQ96N28 172 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 C7orf71A4D174 169 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 D6R8Y8 96 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 M0R2Z0 102 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 FOSL1P15407 271 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 S100A4P26447 101 aaKnown RBP10.6□□□□□ -0.71
LIG3-205ENST00000585941 CKS2P33552 79 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 SSTP61278 116 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 ANXA2RQ3ZCQ2 193 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 DUX3Q96PT4 197 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 SIGLEC8Q9NYZ4 499 aa10.6□□□□□ -0.71
LIG3-205ENST00000585941 H3BVH4 76 aa10.59□□□□□ -0.71
LIG3-205ENST00000585941 DEFB114Q30KQ6 69 aa10.59□□□□□ -0.71
LIG3-205ENST00000585941 PRR31Q5SQ13 230 aa10.59□□□□□ -0.71
LIG3-205ENST00000585941 CDPF1Q6NVV7 123 aa10.59□□□□□ -0.71
LIG3-205ENST00000585941 FAM19A2Q8N3H0 131 aa10.59□□□□□ -0.71
LIG3-205ENST00000585941 OR10AG1Q8NH19 301 aa10.59□□□□□ -0.71
LIG3-205ENST00000585941 URB1-AS1Q96HZ7 61 aa10.59□□□□□ -0.71
LIG3-205ENST00000585941 SPAG8Q99932 426 aaPredicted RBP10.59□□□□□ -0.71
LIG3-205ENST00000585941 SMR3AQ99954 134 aa10.59□□□□□ -0.71
LIG3-205ENST00000585941 MSRB1Q9NZV6 116 aa10.59□□□□□ -0.71
LIG3-205ENST00000585941 OR4C46A6NHA9 309 aa10.58□□□□□ -0.72
LIG3-205ENST00000585941 CD33P20138 364 aa10.58□□□□□ -0.72
LIG3-205ENST00000585941 FAM159AQ6UWV7 190 aa10.58□□□□□ -0.72
LIG3-205ENST00000585941 TMEM61Q8N0U2 210 aa10.58□□□□□ -0.72
LIG3-205ENST00000585941 PRSS3P2Q8NHM4 247 aa10.58□□□□□ -0.72
LIG3-205ENST00000585941 CITED2Q99967 270 aaPredicted RBP10.58□□□□□ -0.72
LIG3-205ENST00000585941 RNF114Q9Y508 228 aa10.58□□□□□ -0.72
LIG3-205ENST00000585941 NF1P21359 2839 aa10.58□□□□□ -0.72
LIG3-205ENST00000585941 NOTCH2Q04721 2471 aa10.58□□□□□ -0.72
LIG3-205ENST00000585941 CDKN1BP46527 198 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 PKIAP61925 76 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 TDRG1Q3Y452 100 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 Q6ZQT7 251 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 FA2HQ7L5A8 372 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 SCRT2Q9NQ03 307 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 AP5S1Q9NUS5 200 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 ANK3Q12955 4377 aaKnown RBP10.57□□□□□ -0.72
LIG3-205ENST00000585941 A8MTW9 85 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 TSTD3H0UI37 97 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 KRTDAPP60985 99 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 RNF185Q96GF1 192 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 PHLDA3Q9Y5J5 127 aa10.57□□□□□ -0.72
LIG3-205ENST00000585941 A0A1W2PRX2 142 aa10.56□□□□□ -0.72
LIG3-205ENST00000585941 TCF21O43680 179 aa10.56□□□□□ -0.72
LIG3-205ENST00000585941 HLA-DRB4P13762 266 aa10.56□□□□□ -0.72
LIG3-205ENST00000585941 PROK1P58294 105 aa10.56□□□□□ -0.72
LIG3-205ENST00000585941 C11orf44Q8N8P7 122 aa10.56□□□□□ -0.72
LIG3-205ENST00000585941 HLA-DRB4X5D2U9 266 aa10.56□□□□□ -0.72
LIG3-205ENST00000585941 TRAV12-3A0A0B4J271 114 aa10.55□□□□□ -0.72
LIG3-205ENST00000585941 IGHV1-24A0A0C4DH33 117 aa10.55□□□□□ -0.72
LIG3-205ENST00000585941 DEFB131AP59861 70 aa10.55□□□□□ -0.72
LIG3-205ENST00000585941 KIR3DS1Q14943 382 aa10.55□□□□□ -0.72
LIG3-205ENST00000585941 C3orf79P0CE67 100 aa10.54□□□□□ -0.72
LIG3-205ENST00000585941 EVI2AP22794 236 aa10.54□□□□□ -0.72
LIG3-205ENST00000585941 CD300EQ496F6 205 aaPredicted RBP10.54□□□□□ -0.72
LIG3-205ENST00000585941 AMTNQ6UX39 209 aa10.54□□□□□ -0.72
LIG3-205ENST00000585941 MRAP2Q96G30 205 aa10.54□□□□□ -0.72
LIG3-205ENST00000585941 MAP1LC3AQ9H492 121 aa10.54□□□□□ -0.72
LIG3-205ENST00000585941 NXPH4O95158 308 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 LEPROTL1O95214 131 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 RNASE3P12724 160 aaKnown RBP10.53□□□□□ -0.72
LIG3-205ENST00000585941 BTF3P20290 206 aaKnown RBP10.53□□□□□ -0.72
LIG3-205ENST00000585941 TEX43Q6ZNM6 134 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 CLUHP3Q96NS8 147 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 HSPB8Q9UJY1 196 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 SORL1Q92673 2214 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 H3BMM0 161 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 GNRH2O43555 120 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 NPYP01303 97 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 IGKV3-20P01619 116 aa10.53□□□□□ -0.72
LIG3-205ENST00000585941 CMC4P56277 68 aaPredicted RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms