RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 TNFSF15O95150 251 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 SCGB1A1P11684 91 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 ADCYAP1P18509 176 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 CMPK1P30085 196 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 FXYD3Q14802 87 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 TMEM244Q5VVB8 128 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 Q5XG85 94 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 UNQ5815/PRO19632Q6UWF5 114 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 TMEM91Q6ZNR0 172 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 AKAP14Q86UN6 197 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 LINC00208Q96KT6 92 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 PLAC8Q9NZF1 115 aa0.59□□□□□ -2.31
SMCHD1-209ENST00000583441 PTPRDP23468 1912 aa0.59□□□□□ -2.32
SMCHD1-209ENST00000583441 ARAP1Q96P48 1450 aa0.59□□□□□ -2.32
SMCHD1-209ENST00000583441 TRAV2A0A0B4J234 112 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 NBDYA0A0U1RRE5 68 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 LOC101927531A0A1B0GV80 90 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 C9JAW5 83 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 YPEL1O60688 119 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 IL7P13232 177 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 POLR2JP52435 117 aaKnown RBP0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 C5orf56Q8N8D9 126 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 PPDPFLQ8WWR9 84 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 HIGD1AQ9Y241 93 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 ZGRF1Q86YA3 2104 aa0.58□□□□□ -2.32
SMCHD1-209ENST00000583441 PTPRGP23470 1445 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 OR2H2O95918 312 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 IGKCP01834 107 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 MT-ND4LP03901 98 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 HLA-DRB4P13762 266 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 SLC35B3Q9H1N7 401 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 TAS2R8Q9NYW2 309 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 HLA-DRB4X5D2U9 266 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 FANCMQ8IYD8 2048 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 KIAA1549LQ6ZVL6 1849 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 ANKRD30AQ9BXX3 1397 aa0.57□□□□□ -2.32
SMCHD1-209ENST00000583441 TRBV10-1A0A0K0K1A3 114 aa0.56□□□□□ -2.32
SMCHD1-209ENST00000583441 APOC1P02654 83 aa0.56□□□□□ -2.32
SMCHD1-209ENST00000583441 CCKP06307 115 aa0.56□□□□□ -2.32
SMCHD1-209ENST00000583441 ZNF56Q15929 161 aa0.56□□□□□ -2.32
SMCHD1-209ENST00000583441 CTTNBP2Q8WZ74 1663 aa0.56□□□□□ -2.32
SMCHD1-209ENST00000583441 RBP4P02753 201 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 CD3DP04234 171 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 RPL37P61927 97 aaKnown RBP0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 KLKP1Q107X0 134 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 IQCJQ1A5X6 159 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 MORN2Q502X0 79 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 SLC25A26Q70HW3 274 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 PPP1R1CQ8WVI7 109 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 BANF2Q9H503 90 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 DNAJC15Q9Y5T4 150 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 MUC5BQ9HC84 5762 aaPredicted RBP0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 ARHGAP31Q2M1Z3 1444 aa0.55□□□□□ -2.32
SMCHD1-209ENST00000583441 FER1L6Q2WGJ9 1857 aa0.54□□□□□ -2.32
SMCHD1-209ENST00000583441 TEX49A0A1B0GTD5 131 aa0.54□□□□□ -2.32
SMCHD1-209ENST00000583441 A0A1B0GW64 132 aa0.54□□□□□ -2.32
SMCHD1-209ENST00000583441 FXYD1O00168 92 aa0.54□□□□□ -2.32
SMCHD1-209ENST00000583441 AKR1D1P51857 326 aa0.54□□□□□ -2.32
SMCHD1-209ENST00000583441 FAM103A1Q9BTL3 118 aaKnown RBP0.54□□□□□ -2.32
SMCHD1-209ENST00000583441 UHRF1BP1LA0JNW5 1464 aa0.54□□□□□ -2.32
SMCHD1-209ENST00000583441 TANC2Q9HCD6 1990 aa0.54□□□□□ -2.32
SMCHD1-209ENST00000583441 LY6G6CO95867 125 aa0.53□□□□□ -2.32
SMCHD1-209ENST00000583441 ATP6V0E2Q8NHE4 81 aa0.53□□□□□ -2.32
SMCHD1-209ENST00000583441 TMEM14BQ9NUH8 114 aa0.53□□□□□ -2.32
SMCHD1-209ENST00000583441 KCPQ6ZWJ8 1503 aa0.53□□□□□ -2.33
SMCHD1-209ENST00000583441 WDR97A6NE52 1622 aa0.53□□□□□ -2.33
SMCHD1-209ENST00000583441 APCP25054 2843 aa0.52□□□□□ -2.33
SMCHD1-209ENST00000583441 PRH1P02810 166 aa0.52□□□□□ -2.33
SMCHD1-209ENST00000583441 ATP11AUNQ6ZP68 121 aa0.52□□□□□ -2.33
SMCHD1-209ENST00000583441 NDUFA11Q86Y39 141 aa0.52□□□□□ -2.33
SMCHD1-209ENST00000583441 MMGT1Q8N4V1 131 aa0.52□□□□□ -2.33
SMCHD1-209ENST00000583441 BATF3Q9NR55 127 aa0.52□□□□□ -2.33
SMCHD1-209ENST00000583441 COA4Q9NYJ1 87 aa0.52□□□□□ -2.33
SMCHD1-209ENST00000583441 ZFC3H1O60293 1989 aaKnown RBP0.52□□□□□ -2.33
SMCHD1-209ENST00000583441 TRAV17A0A0B4J275 112 aa0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 CXorf51AA0A1B0GTR3 108 aa0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 MCRIP1C9JLW8 97 aa0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 BLMP54132 1417 aaPredicted RBP0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 ZCCHC6Q5VYS8 1495 aaKnown RBP0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 CCDC171Q6TFL3 1326 aa0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 DYNLRB2Q8TF09 96 aa0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 ZNF462Q96JM2 2506 aa0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 SMR3AQ99954 134 aa0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 NOP16Q9Y3C1 178 aaKnown RBP0.51□□□□□ -2.33
SMCHD1-209ENST00000583441 ANK1P16157 1881 aa0.5□□□□□ -2.33
SMCHD1-209ENST00000583441 MDN1Q9NU22 5596 aa0.5□□□□□ -2.33
SMCHD1-209ENST00000583441 CDK12Q9NYV4 1490 aaPredicted RBP0.5□□□□□ -2.33
SMCHD1-209ENST00000583441 TRAV12-2A0A075B6T6 113 aa0.5□□□□□ -2.33
SMCHD1-209ENST00000583441 A0A096LNT2 108 aa0.5□□□□□ -2.33
SMCHD1-209ENST00000583441 SNX29P2Q8IUI4 249 aa0.5□□□□□ -2.33
SMCHD1-209ENST00000583441 ZDBF2Q9HCK1 2354 aa0.49□□□□□ -2.33
SMCHD1-209ENST00000583441 CPDO75976 1380 aa0.49□□□□□ -2.33
SMCHD1-209ENST00000583441 CCDC179H3BU77 68 aa0.49□□□□□ -2.33
SMCHD1-209ENST00000583441 M0R2P5 195 aa0.49□□□□□ -2.33
SMCHD1-209ENST00000583441 NCS1P62166 190 aa0.49□□□□□ -2.33
SMCHD1-209ENST00000583441 KRTAP21-1Q3LI58 79 aa0.49□□□□□ -2.33
SMCHD1-209ENST00000583441 CLLU1Q5K131 121 aa0.49□□□□□ -2.33
SMCHD1-209ENST00000583441 BET1LQ9NYM9 111 aa0.49□□□□□ -2.33
SMCHD1-209ENST00000583441 ERG28Q9UKR5 140 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms