RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 IGKV3D-20A0A0C4DH25 116 aa11.19□□□□□ -0.62
SS18-215ENST00000580642 F2Z2F3 143 aa11.19□□□□□ -0.62
SS18-215ENST00000580642 MED14OSP0DP75 135 aa11.19□□□□□ -0.62
SS18-215ENST00000580642 KRTAP10-11P60412 298 aa11.19□□□□□ -0.62
SS18-215ENST00000580642 WFDC10AQ9H1F0 79 aa11.19□□□□□ -0.62
SS18-215ENST00000580642 TRBV24-1A0A075B6N3 115 aa11.18□□□□□ -0.62
SS18-215ENST00000580642 IGHV1OR15-1A0A075B7D0 117 aa11.18□□□□□ -0.62
SS18-215ENST00000580642 G3V4G9 280 aa11.18□□□□□ -0.62
SS18-215ENST00000580642 WDR73Q6P4I2 378 aa11.18□□□□□ -0.62
SS18-215ENST00000580642 TP53TG3Q9ULZ0 132 aa11.18□□□□□ -0.62
SS18-215ENST00000580642 GOLT1BQ9Y3E0 138 aa11.18□□□□□ -0.62
SS18-215ENST00000580642 TRAV12-2A0A075B6T6 113 aa11.17□□□□□ -0.62
SS18-215ENST00000580642 J3KRW8 73 aa11.17□□□□□ -0.62
SS18-215ENST00000580642 KIR3DS1Q14943 382 aa11.17□□□□□ -0.62
SS18-215ENST00000580642 ANXA2RQ3ZCQ2 193 aa11.17□□□□□ -0.62
SS18-215ENST00000580642 NEU1Q99519 415 aa11.17□□□□□ -0.62
SS18-215ENST00000580642 C11orf21Q9P2W6 132 aa11.17□□□□□ -0.62
SS18-215ENST00000580642 TRGV11A0A075B6L2 103 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 A0A1B0GW15 77 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 GIG44P09565 113 aaPredicted RBP11.16□□□□□ -0.62
SS18-215ENST00000580642 IGLC6P0CF74 106 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 IGHV4-30-4P0DP06 118 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 RPL35AP18077 110 aaKnown RBP11.16□□□□□ -0.62
SS18-215ENST00000580642 ELOBQ15370 118 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 TMEM88Q6PEY1 159 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 RASL11AQ6T310 242 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 ATP5L2Q7Z4Y8 100 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 CBLN2Q8IUK8 224 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 YPEL4Q96NS1 127 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 SSBP4Q9BWG4 385 aaPredicted RBP11.16□□□□□ -0.62
SS18-215ENST00000580642 XCL2Q9UBD3 114 aa11.16□□□□□ -0.62
SS18-215ENST00000580642 HIGD1CA8MV81 97 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 CA1P00915 261 aaPredicted RBP11.15□□□□□ -0.62
SS18-215ENST00000580642 OR5AL1P0C617 328 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 CTRLP40313 264 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 ASIPP42127 132 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 COX19Q49B96 90 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 ZNF575Q86XF7 245 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 CSNK1G2-AS1Q8NCQ2 148 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 GTSF1Q8WW33 167 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 BORCS7Q96B45 105 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 CNFNQ9BYD5 112 aa11.15□□□□□ -0.62
SS18-215ENST00000580642 SCO1O75880 301 aa11.14□□□□□ -0.63
SS18-215ENST00000580642 TYMSP04818 313 aa11.14□□□□□ -0.63
SS18-215ENST00000580642 FXYD7P58549 80 aa11.14□□□□□ -0.63
SS18-215ENST00000580642 FER1L6-AS1Q8NA97 138 aa11.14□□□□□ -0.63
SS18-215ENST00000580642 NUP35Q8NFH5 326 aa11.14□□□□□ -0.63
SS18-215ENST00000580642 LINC01587Q99440 93 aa11.14□□□□□ -0.63
SS18-215ENST00000580642 NAGKQ9UJ70 344 aa11.14□□□□□ -0.63
SS18-215ENST00000580642 SNAI2O43623 268 aa11.13□□□□□ -0.63
SS18-215ENST00000580642 S100A8P05109 93 aa11.13□□□□□ -0.63
SS18-215ENST00000580642 S100A4P26447 101 aaKnown RBP11.13□□□□□ -0.63
SS18-215ENST00000580642 CACNG7P62955 275 aa11.13□□□□□ -0.63
SS18-215ENST00000580642 ZNF705AQ6ZN79 300 aaPredicted RBP11.13□□□□□ -0.63
SS18-215ENST00000580642 Q6ZWC4 215 aa11.13□□□□□ -0.63
SS18-215ENST00000580642 C1orf158Q8N1D5 194 aa11.13□□□□□ -0.63
SS18-215ENST00000580642 TMEM208Q9BTX3 173 aa11.13□□□□□ -0.63
SS18-215ENST00000580642 SCRT2Q9NQ03 307 aa11.13□□□□□ -0.63
SS18-215ENST00000580642 AGRNO00468 2067 aa11.13□□□□□ -0.63
SS18-215ENST00000580642 IGHV4-4A0A075B6R2 117 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 TMSB15BA0A087X1C1 80 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 A0A1B0GUT8 65 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 SMIM9A6NGZ8 99 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 RBMY1A1P0DJD3 496 aaKnown RBP11.12□□□□□ -0.63
SS18-215ENST00000580642 RBMY1CP0DJD4 496 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 FAM3BP58499 235 aaPredicted RBP11.12□□□□□ -0.63
SS18-215ENST00000580642 RIGQ13278 110 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 RBMY1FQ15415 496 aaKnown RBP11.12□□□□□ -0.63
SS18-215ENST00000580642 PIK3CD-AS1Q5SR53 167 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 MUC21Q5SSG8 566 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 Q6ZQT7 251 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 ZNF493Q6ZR52 646 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 PTH2Q96A98 100 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 NDUFAF3Q9BU61 184 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 URGCP-MRPS24S4R325 110 aa11.12□□□□□ -0.63
SS18-215ENST00000580642 IGHV3-16A0A0C4DH30 117 aa11.11□□□□□ -0.63
SS18-215ENST00000580642 CBY3A6NI87 242 aa11.11□□□□□ -0.63
SS18-215ENST00000580642 COLCA2A8K830 154 aa11.11□□□□□ -0.63
SS18-215ENST00000580642 TCL1AP56279 114 aa11.11□□□□□ -0.63
SS18-215ENST00000580642 FAM210BQ96KR6 192 aa11.11□□□□□ -0.63
SS18-215ENST00000580642 GRIFINA4D1Z8 144 aa11.1□□□□□ -0.63
SS18-215ENST00000580642 ARMS2P0C7Q2 107 aa11.1□□□□□ -0.63
SS18-215ENST00000580642 GZMBP10144 247 aa11.1□□□□□ -0.63
SS18-215ENST00000580642 ZNF415Q09FC8 603 aa11.1□□□□□ -0.63
SS18-215ENST00000580642 LYZL1Q6UWQ5 148 aa11.1□□□□□ -0.63
SS18-215ENST00000580642 PGLYRP4Q96LB8 373 aa11.1□□□□□ -0.63
SS18-215ENST00000580642 TP53TG1Q9Y2A0 90 aa11.1□□□□□ -0.63
SS18-215ENST00000580642 PKD1L1Q8TDX9 2849 aa11.09□□□□□ -0.63
SS18-215ENST00000580642 GNRH2O43555 120 aa11.09□□□□□ -0.63
SS18-215ENST00000580642 MT-ND6P03923 174 aa11.09□□□□□ -0.63
SS18-215ENST00000580642 RNASE3P12724 160 aaKnown RBP11.09□□□□□ -0.63
SS18-215ENST00000580642 TMEM263Q8WUH6 116 aaKnown RBP11.09□□□□□ -0.63
SS18-215ENST00000580642 C9orf85Q96MD7 179 aa11.09□□□□□ -0.63
SS18-215ENST00000580642 SPXQ9BT56 116 aa11.09□□□□□ -0.63
SS18-215ENST00000580642 CMYA5Q8N3K9 4069 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 TGIF2-C20orf24A0A0A6YYL0 155 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 A0A1B0GXF2 115 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 NXPH4O95158 308 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 HBBP68871 147 aa11.08□□□□□ -0.64
SS18-215ENST00000580642 RRN3P1Q2M238 152 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms