RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 TMEM256Q8N2U0 113 aa11.76□□□□□ -0.53
SS18-211ENST00000578954 ZNF705GA8MUZ8 300 aaPredicted RBP11.75□□□□□ -0.53
SS18-211ENST00000578954 PYGO2Q9BRQ0 406 aa11.75□□□□□ -0.53
SS18-211ENST00000578954 TMEM189A5PLL7 270 aa11.74□□□□□ -0.53
SS18-211ENST00000578954 H7BYZ3 331 aa11.74□□□□□ -0.53
SS18-211ENST00000578954 RPS20P60866 119 aaKnown RBP11.74□□□□□ -0.53
SS18-211ENST00000578954 RPL19P84098 196 aaKnown RBP11.74□□□□□ -0.53
SS18-211ENST00000578954 ANXA2RQ3ZCQ2 193 aa11.74□□□□□ -0.53
SS18-211ENST00000578954 ZNF705AQ6ZN79 300 aaPredicted RBP11.74□□□□□ -0.53
SS18-211ENST00000578954 OR2D3Q8NGH3 330 aa11.74□□□□□ -0.53
SS18-211ENST00000578954 KCNS1Q96KK3 526 aa11.74□□□□□ -0.53
SS18-211ENST00000578954 RPS10P5Q9NQ39 176 aa11.74□□□□□ -0.53
SS18-211ENST00000578954 IGHV1OR15-1A0A075B7D0 117 aa11.73□□□□□ -0.53
SS18-211ENST00000578954 ORM1P02763 201 aa11.73□□□□□ -0.53
SS18-211ENST00000578954 DNLZQ5SXM8 178 aa11.73□□□□□ -0.53
SS18-211ENST00000578954 GOLT1BQ9Y3E0 138 aa11.73□□□□□ -0.53
SS18-211ENST00000578954 FAM231BA6NCW3 169 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 A8MWL6 223 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 FRMD6-AS1P0C7T7 363 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 MUC21Q5SSG8 566 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 FAM159AQ6UWV7 190 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 Q6ZWC4 215 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 TSKUQ8WUA8 353 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 IMMP2LQ96T52 175 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 GFRA4Q9GZZ7 299 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 IL36BQ9NZH7 164 aa11.72□□□□□ -0.53
SS18-211ENST00000578954 SMIM27A0A1W2PRY6 76 aa11.71□□□□□ -0.53
SS18-211ENST00000578954 XKRY2A2RUG3 117 aa11.71□□□□□ -0.53
SS18-211ENST00000578954 PRB2P02812 416 aaPredicted RBP11.71□□□□□ -0.53
SS18-211ENST00000578954 TYMSP04818 313 aa11.71□□□□□ -0.53
SS18-211ENST00000578954 FOXA3P55318 350 aaPredicted RBP11.71□□□□□ -0.53
SS18-211ENST00000578954 LCE2DQ5TA82 110 aaPredicted RBP11.71□□□□□ -0.53
SS18-211ENST00000578954 NAGKQ9UJ70 344 aa11.71□□□□□ -0.53
SS18-211ENST00000578954 CXorf65A6NEN9 183 aa11.7□□□□□ -0.54
SS18-211ENST00000578954 IGLC6P0CF74 106 aa11.7□□□□□ -0.54
SS18-211ENST00000578954 MED14OSP0DP75 135 aa11.7□□□□□ -0.54
SS18-211ENST00000578954 LINC01587Q99440 93 aa11.7□□□□□ -0.54
SS18-211ENST00000578954 NEU1Q99519 415 aa11.7□□□□□ -0.54
SS18-211ENST00000578954 TP53TG3Q9ULZ0 132 aa11.7□□□□□ -0.54
SS18-211ENST00000578954 TRGV11A0A075B6L2 103 aa11.69□□□□□ -0.54
SS18-211ENST00000578954 TMSB15BA0A087X1C1 80 aa11.69□□□□□ -0.54
SS18-211ENST00000578954 GTSF1Q8WW33 167 aa11.69□□□□□ -0.54
SS18-211ENST00000578954 TMEM208Q9BTX3 173 aa11.69□□□□□ -0.54
SS18-211ENST00000578954 SSBP4Q9BWG4 385 aaPredicted RBP11.69□□□□□ -0.54
SS18-211ENST00000578954 IGHV3-16A0A0C4DH30 117 aa11.68□□□□□ -0.54
SS18-211ENST00000578954 A0A1W2PPQ1 181 aa11.68□□□□□ -0.54
SS18-211ENST00000578954 GNRH2O43555 120 aa11.68□□□□□ -0.54
SS18-211ENST00000578954 SNAI2O43623 268 aa11.68□□□□□ -0.54
SS18-211ENST00000578954 GZMBP10144 247 aa11.68□□□□□ -0.54
SS18-211ENST00000578954 RNF183Q96D59 192 aa11.68□□□□□ -0.54
SS18-211ENST00000578954 TP53TG1Q9Y2A0 90 aa11.68□□□□□ -0.54
SS18-211ENST00000578954 GRIFINA4D1Z8 144 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 CBY3A6NI87 242 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 RNASE3P12724 160 aaKnown RBP11.67□□□□□ -0.54
SS18-211ENST00000578954 CTRLP40313 264 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 ASIPP42127 132 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 DEFB135Q30KP9 77 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 C9orf85Q96MD7 179 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 RCHY1Q96PM5 261 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 SCRT2Q9NQ03 307 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 SMCO4Q9NRQ5 59 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 NAT8BQ9UHF3 227 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 X6R8D5 127 aa11.67□□□□□ -0.54
SS18-211ENST00000578954 TRAV9-1A0A075B6T8 112 aa11.66□□□□□ -0.54
SS18-211ENST00000578954 SMIM9A6NGZ8 99 aa11.66□□□□□ -0.54
SS18-211ENST00000578954 HIGD1CA8MV81 97 aa11.66□□□□□ -0.54
SS18-211ENST00000578954 OR5AL1P0C617 328 aa11.66□□□□□ -0.54
SS18-211ENST00000578954 FER1L6-AS1Q8NA97 138 aa11.66□□□□□ -0.54
SS18-211ENST00000578954 C11orf72Q8NBR9 251 aa11.66□□□□□ -0.54
SS18-211ENST00000578954 NUP35Q8NFH5 326 aa11.66□□□□□ -0.54
SS18-211ENST00000578954 RNASE8Q8TDE3 154 aaKnown RBP11.66□□□□□ -0.54
SS18-211ENST00000578954 TMEM263Q8WUH6 116 aaKnown RBP11.66□□□□□ -0.54
SS18-211ENST00000578954 YPEL4Q96NS1 127 aa11.66□□□□□ -0.54
SS18-211ENST00000578954 CNFNQ9BYD5 112 aa11.66□□□□□ -0.54
SS18-211ENST00000578954 IGHV3OR16-12A0A075B7B8 117 aa11.65□□□□□ -0.54
SS18-211ENST00000578954 KCNIP4Q6PIL6 250 aa11.65□□□□□ -0.54
SS18-211ENST00000578954 ZNF493Q6ZR52 646 aa11.65□□□□□ -0.54
SS18-211ENST00000578954 CBLN2Q8IUK8 224 aa11.65□□□□□ -0.54
SS18-211ENST00000578954 IL17DQ8TAD2 202 aa11.65□□□□□ -0.54
SS18-211ENST00000578954 F2Z2F3 143 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 H3BVH4 76 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 SPRY2O43597 315 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 SCO1O75880 301 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 PRM2P04554 102 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 ARMS2P0C7Q2 107 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 AZU1P20160 251 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 S100PP25815 95 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 S100A4P26447 101 aaKnown RBP11.64□□□□□ -0.55
SS18-211ENST00000578954 TCL1AP56279 114 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 ZNF415Q09FC8 603 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 RRN3P1Q2M238 152 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 WDR73Q6P4I2 378 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 TMEM88Q6PEY1 159 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 MDFICQ9P1T7 246 aa11.64□□□□□ -0.55
SS18-211ENST00000578954 IGHV4-4A0A075B6R2 117 aa11.63□□□□□ -0.55
SS18-211ENST00000578954 PLAC8L1A1L4L8 177 aa11.63□□□□□ -0.55
SS18-211ENST00000578954 NXPH4O95158 308 aa11.63□□□□□ -0.55
SS18-211ENST00000578954 FAM3BP58499 235 aaPredicted RBP11.63□□□□□ -0.55
SS18-211ENST00000578954 ELOBQ15370 118 aa11.63□□□□□ -0.55
SS18-211ENST00000578954 LYZL1Q6UWQ5 148 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms