RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 EIF5AL1Q6IS14 154 aaKnown RBP13.7□□□□□ -0.22
SS18-209ENST00000578595 DPPA3Q6W0C5 159 aa13.7□□□□□ -0.22
SS18-209ENST00000578595 POM121L12Q8N7R1 296 aa13.7□□□□□ -0.22
SS18-209ENST00000578595 TRAV26-1A0A087WT03 109 aa13.69□□□□□ -0.22
SS18-209ENST00000578595 SPINK4O60575 86 aa13.69□□□□□ -0.22
SS18-209ENST00000578595 PAGE4O60829 102 aa13.69□□□□□ -0.22
SS18-209ENST00000578595 IGLV2-11P01706 119 aa13.69□□□□□ -0.22
SS18-209ENST00000578595 SAPCD1Q5SSQ6 148 aa13.69□□□□□ -0.22
SS18-209ENST00000578595 Q86TA4 180 aa13.69□□□□□ -0.22
SS18-209ENST00000578595 HIST1H2BAQ96A08 127 aa13.69□□□□□ -0.22
SS18-209ENST00000578595 KCNS1Q96KK3 526 aa13.69□□□□□ -0.22
SS18-209ENST00000578595 ARL2-SNX15V9GYD0 113 aa13.69□□□□□ -0.22
SS18-209ENST00000578595 GNRH2O43555 120 aa13.68□□□□□ -0.22
SS18-209ENST00000578595 HOXA5P20719 270 aa13.68□□□□□ -0.22
SS18-209ENST00000578595 AKR1C3P42330 323 aa13.68□□□□□ -0.22
SS18-209ENST00000578595 MBD3L1Q8WWY6 194 aa13.68□□□□□ -0.22
SS18-209ENST00000578595 VPS13DQ5THJ4 4388 aa13.67□□□□□ -0.22
SS18-209ENST00000578595 TYMSP04818 313 aa13.67□□□□□ -0.22
SS18-209ENST00000578595 ZNF80P51504 273 aaPredicted RBP13.67□□□□□ -0.22
SS18-209ENST00000578595 PFN1P07737 140 aaKnown RBP13.66□□□□□ -0.22
SS18-209ENST00000578595 LGALS9BQ3B8N2 356 aa13.66□□□□□ -0.22
SS18-209ENST00000578595 TDRG1Q3Y452 100 aa13.66□□□□□ -0.22
SS18-209ENST00000578595 SPXQ9BT56 116 aa13.66□□□□□ -0.22
SS18-209ENST00000578595 SLC51BQ86UW2 128 aa13.65□□□□□ -0.22
SS18-209ENST00000578595 FMC1Q96HJ9 113 aa13.65□□□□□ -0.22
SS18-209ENST00000578595 IGLV2-18A0A075B6J9 118 aa13.64□□□□□ -0.23
SS18-209ENST00000578595 IGHV3-16A0A0C4DH30 117 aa13.64□□□□□ -0.23
SS18-209ENST00000578595 TEX46H3BTG2 121 aa13.64□□□□□ -0.23
SS18-209ENST00000578595 M0R2N4 97 aa13.64□□□□□ -0.23
SS18-209ENST00000578595 RAB5CP51148 216 aa13.64□□□□□ -0.23
SS18-209ENST00000578595 TCEAL7Q9BRU2 100 aa13.64□□□□□ -0.23
SS18-209ENST00000578595 GNG13Q9P2W3 67 aa13.64□□□□□ -0.23
SS18-209ENST00000578595 TRGV4A0A0C4DH28 118 aa13.63□□□□□ -0.23
SS18-209ENST00000578595 CCL18P55774 89 aa13.63□□□□□ -0.23
SS18-209ENST00000578595 RNF212Q495C1 297 aa13.63□□□□□ -0.23
SS18-209ENST00000578595 C9JCJ5 164 aa13.62□□□□□ -0.23
SS18-209ENST00000578595 SFTA3P0C7M3 94 aa13.62□□□□□ -0.23
SS18-209ENST00000578595 C18orf15Q96N68 181 aa13.62□□□□□ -0.23
SS18-209ENST00000578595 C11orf21Q9P2W6 132 aa13.62□□□□□ -0.23
SS18-209ENST00000578595 A0A1B0GVG6 124 aa13.61□□□□□ -0.23
SS18-209ENST00000578595 SCO2A0A1W2PP80 73 aa13.61□□□□□ -0.23
SS18-209ENST00000578595 M0R2P5 195 aa13.61□□□□□ -0.23
SS18-209ENST00000578595 PAX4O43316 350 aa13.61□□□□□ -0.23
SS18-209ENST00000578595 S100A4P26447 101 aaKnown RBP13.61□□□□□ -0.23
SS18-209ENST00000578595 SULT1A2P50226 295 aa13.61□□□□□ -0.23
SS18-209ENST00000578595 C9orf62Q8N4C0 152 aa13.61□□□□□ -0.23
SS18-209ENST00000578595 MANBALQ9NQG1 85 aa13.61□□□□□ -0.23
SS18-209ENST00000578595 ZFP30Q9Y2G7 519 aa13.61□□□□□ -0.23
SS18-209ENST00000578595 FABP5P3A8MUU1 101 aa13.6□□□□□ -0.23
SS18-209ENST00000578595 ORM1P02763 201 aa13.6□□□□□ -0.23
SS18-209ENST00000578595 NHLRC2Q8NBF2 726 aa13.6□□□□□ -0.23
SS18-209ENST00000578595 ZC2HC1AQ96GY0 325 aa13.6□□□□□ -0.23
SS18-209ENST00000578595 KMT2AQ03164 3969 aa13.6□□□□□ -0.23
SS18-209ENST00000578595 M0R036 132 aa13.59□□□□□ -0.23
SS18-209ENST00000578595 OR4C5Q8NGB2 326 aa13.59□□□□□ -0.23
SS18-209ENST00000578595 ZNF479Q96JC4 524 aa13.59□□□□□ -0.23
SS18-209ENST00000578595 DNAH6Q9C0G6 4158 aa13.58□□□□□ -0.23
SS18-209ENST00000578595 B4DEV8 164 aa13.58□□□□□ -0.24
SS18-209ENST00000578595 IFNA1P01562 189 aa13.58□□□□□ -0.24
SS18-209ENST00000578595 ASIPP42127 132 aa13.58□□□□□ -0.24
SS18-209ENST00000578595 CCL20P78556 96 aa13.58□□□□□ -0.24
SS18-209ENST00000578595 RASL10AQ92737 203 aa13.58□□□□□ -0.24
SS18-209ENST00000578595 VSIG2Q96IQ7 327 aa13.58□□□□□ -0.24
SS18-209ENST00000578595 PRO0255Q9UI72 69 aa13.58□□□□□ -0.24
SS18-209ENST00000578595 ICOSQ9Y6W8 199 aa13.58□□□□□ -0.24
SS18-209ENST00000578595 TRAV4A0A0B4J268 109 aa13.57□□□□□ -0.24
SS18-209ENST00000578595 H3BNG1 76 aa13.57□□□□□ -0.24
SS18-209ENST00000578595 SH2D1AO60880 128 aa13.57□□□□□ -0.24
SS18-209ENST00000578595 SLAQ13239 276 aa13.57□□□□□ -0.24
SS18-209ENST00000578595 ZNF876PQ49A33 203 aa13.57□□□□□ -0.24
SS18-209ENST00000578595 FAM162BQ5T6X4 162 aa13.57□□□□□ -0.24
SS18-209ENST00000578595 PCNPQ8WW12 178 aaKnown RBP13.57□□□□□ -0.24
SS18-209ENST00000578595 HHLA3Q9XRX5 114 aa13.57□□□□□ -0.24
SS18-209ENST00000578595 LINC00588Q9Y4M8 146 aa13.57□□□□□ -0.24
SS18-209ENST00000578595 TMSB15BA0A087X1C1 80 aa13.56□□□□□ -0.24
SS18-209ENST00000578595 LTAP01374 205 aa13.56□□□□□ -0.24
SS18-209ENST00000578595 S100A9P06702 114 aaKnown RBP13.56□□□□□ -0.24
SS18-209ENST00000578595 NKX2-5P52952 324 aaPredicted RBP13.56□□□□□ -0.24
SS18-209ENST00000578595 FAM3BP58499 235 aaPredicted RBP13.56□□□□□ -0.24
SS18-209ENST00000578595 FHL2Q14192 279 aa13.56□□□□□ -0.24
SS18-209ENST00000578595 A0A096LPF7 62 aa13.55□□□□□ -0.24
SS18-209ENST00000578595 TRAV1-1A0A0B4J248 108 aa13.55□□□□□ -0.24
SS18-209ENST00000578595 IGKV3D-20A0A0C4DH25 116 aa13.55□□□□□ -0.24
SS18-209ENST00000578595 TRBV6-1A0A0K0K1D8 114 aa13.55□□□□□ -0.24
SS18-209ENST00000578595 CRYBA4P53673 196 aa13.55□□□□□ -0.24
SS18-209ENST00000578595 ALKAL2Q6UX46 152 aa13.55□□□□□ -0.24
SS18-209ENST00000578595 GRIFINA4D1Z8 144 aa13.54□□□□□ -0.24
SS18-209ENST00000578595 H3BVH4 76 aa13.54□□□□□ -0.24
SS18-209ENST00000578595 PRR27Q6MZM9 219 aa13.54□□□□□ -0.24
SS18-209ENST00000578595 BAGE2Q86Y30 109 aa13.54□□□□□ -0.24
SS18-209ENST00000578595 C9orf85Q96MD7 179 aa13.54□□□□□ -0.24
SS18-209ENST00000578595 RNASE3P12724 160 aaKnown RBP13.53□□□□□ -0.24
SS18-209ENST00000578595 CRIP1P50238 77 aa13.53□□□□□ -0.24
SS18-209ENST00000578595 ZNF506Q5JVG8 444 aa13.53□□□□□ -0.24
SS18-209ENST00000578595 IGHV3-73A0A0B4J1V6 119 aa13.52□□□□□ -0.25
SS18-209ENST00000578595 PGPEP1LA6NFU8 196 aa13.52□□□□□ -0.25
SS18-209ENST00000578595 SRIP30626 198 aa13.52□□□□□ -0.25
SS18-209ENST00000578595 MRPL23Q16540 153 aaKnown RBP13.52□□□□□ -0.25
SS18-209ENST00000578595 KRBOX1C9JBD0 128 aa13.51□□□□□ -0.25
SS18-209ENST00000578595 GYPEP15421 78 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms