RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 COX6A2Q02221 97 aa9.8□□□□□ -0.84
VPS53-218ENST00000575207 PDE6HQ13956 83 aa9.8□□□□□ -0.84
VPS53-218ENST00000575207 KRTAP26-1Q6PEX3 210 aa9.8□□□□□ -0.84
VPS53-218ENST00000575207 Q9UF83 564 aa9.8□□□□□ -0.84
VPS53-218ENST00000575207 TMEM262E9PQX1 116 aa9.79□□□□□ -0.84
VPS53-218ENST00000575207 CTDSPLO15194 276 aa9.79□□□□□ -0.84
VPS53-218ENST00000575207 FGF8P55075 233 aaPredicted RBP9.79□□□□□ -0.84
VPS53-218ENST00000575207 SRPXP78539 464 aa9.79□□□□□ -0.84
VPS53-218ENST00000575207 TRIM63Q969Q1 353 aa9.79□□□□□ -0.84
VPS53-218ENST00000575207 SAMD10Q9BYL1 202 aa9.79□□□□□ -0.84
VPS53-218ENST00000575207 SDF2L1Q9HCN8 221 aa9.79□□□□□ -0.84
VPS53-218ENST00000575207 MTFP1Q9UDX5 166 aa9.79□□□□□ -0.84
VPS53-218ENST00000575207 DIRC3C9JPN6 131 aa9.78□□□□□ -0.84
VPS53-218ENST00000575207 APOA1P02647 267 aa9.78□□□□□ -0.84
VPS53-218ENST00000575207 ANGP03950 147 aaKnown RBP9.78□□□□□ -0.84
VPS53-218ENST00000575207 HOXB5P09067 269 aa9.78□□□□□ -0.84
VPS53-218ENST00000575207 TAS2R19P59542 299 aa9.78□□□□□ -0.84
VPS53-218ENST00000575207 FAAP20Q6NZ36 180 aa9.78□□□□□ -0.84
VPS53-218ENST00000575207 TMEM229BQ8NBD8 167 aa9.78□□□□□ -0.84
VPS53-218ENST00000575207 NRG4Q8WWG1 115 aa9.78□□□□□ -0.84
VPS53-218ENST00000575207 SOSTQ9BQB4 213 aa9.78□□□□□ -0.84
VPS53-218ENST00000575207 IGLV1-50A0A075B6I6 118 aa9.77□□□□□ -0.85
VPS53-218ENST00000575207 FNDC10F2Z333 226 aa9.77□□□□□ -0.85
VPS53-218ENST00000575207 IFNA7P01567 189 aa9.77□□□□□ -0.85
VPS53-218ENST00000575207 SLC25A6P12236 298 aa9.77□□□□□ -0.85
VPS53-218ENST00000575207 NDUFS6O75380 124 aaKnown RBP9.76□□□□□ -0.85
VPS53-218ENST00000575207 CAV2P51636 162 aa9.76□□□□□ -0.85
VPS53-218ENST00000575207 OR2T35Q8NGX2 323 aa9.76□□□□□ -0.85
VPS53-218ENST00000575207 CCDC59Q9P031 241 aaKnown RBP9.76□□□□□ -0.85
VPS53-218ENST00000575207 MGAT4CQ9UBM8 478 aa9.76□□□□□ -0.85
VPS53-218ENST00000575207 PIGBOS1A0A0B4J2F0 54 aa9.75□□□□□ -0.85
VPS53-218ENST00000575207 DUXBA0A1W2PPF3 345 aa9.75□□□□□ -0.85
VPS53-218ENST00000575207 ANXA3P12429 323 aa9.75□□□□□ -0.85
VPS53-218ENST00000575207 MPV17L2Q567V2 206 aa9.75□□□□□ -0.85
VPS53-218ENST00000575207 INO80EQ8NBZ0 244 aaPredicted RBP9.75□□□□□ -0.85
VPS53-218ENST00000575207 TMEM14CQ9P0S9 112 aa9.75□□□□□ -0.85
VPS53-218ENST00000575207 COMMD3Q9UBI1 195 aa9.75□□□□□ -0.85
VPS53-218ENST00000575207 RPS19P39019 145 aaKnown RBP9.74□□□□□ -0.85
VPS53-218ENST00000575207 AQP4P55087 323 aa9.74□□□□□ -0.85
VPS53-218ENST00000575207 ZNF506Q5JVG8 444 aa9.74□□□□□ -0.85
VPS53-218ENST00000575207 ZFP2Q6ZN57 461 aa9.74□□□□□ -0.85
VPS53-218ENST00000575207 Q6ZRG5 221 aa9.74□□□□□ -0.85
VPS53-218ENST00000575207 PRSS3P2Q8NHM4 247 aa9.74□□□□□ -0.85
VPS53-218ENST00000575207 GPN1Q9HCN4 374 aaPredicted RBP9.74□□□□□ -0.85
VPS53-218ENST00000575207 DISC1C4P0D8 188 aa9.73□□□□□ -0.85
VPS53-218ENST00000575207 PYYP10082 97 aa9.73□□□□□ -0.85
VPS53-218ENST00000575207 TGFBR1P36897 503 aa9.73□□□□□ -0.85
VPS53-218ENST00000575207 IZUMO2Q6UXV1 221 aa9.73□□□□□ -0.85
VPS53-218ENST00000575207 C12orf45Q8N5I9 185 aaPredicted RBP9.73□□□□□ -0.85
VPS53-218ENST00000575207 C14orf178Q8N769 122 aaPredicted RBP9.73□□□□□ -0.85
VPS53-218ENST00000575207 KCNS1Q96KK3 526 aa9.73□□□□□ -0.85
VPS53-218ENST00000575207 MGST2Q99735 147 aa9.73□□□□□ -0.85
VPS53-218ENST00000575207 PARLQ9H300 379 aa9.73□□□□□ -0.85
VPS53-218ENST00000575207 LENEPQ9Y5L5 61 aa9.73□□□□□ -0.85
VPS53-218ENST00000575207 OR10G7Q8NGN6 311 aa9.72□□□□□ -0.85
VPS53-218ENST00000575207 OR1L4Q8NGR5 311 aa9.72□□□□□ -0.85
VPS53-218ENST00000575207 OR2G3Q8NGZ4 309 aa9.72□□□□□ -0.85
VPS53-218ENST00000575207 ASB13Q8WXK3 278 aa9.72□□□□□ -0.85
VPS53-218ENST00000575207 PSENENQ9NZ42 101 aa9.72□□□□□ -0.85
VPS53-218ENST00000575207 SSPOA2VEC9 5147 aa9.71□□□□□ -0.85
VPS53-218ENST00000575207 IGLV10-54A0A075B6I4 117 aa9.71□□□□□ -0.86
VPS53-218ENST00000575207 TRAV21A0A0B4J279 112 aa9.71□□□□□ -0.86
VPS53-218ENST00000575207 RBAKDNA6NC62 111 aa9.71□□□□□ -0.86
VPS53-218ENST00000575207 PGPEP1LA6NFU8 196 aa9.71□□□□□ -0.86
VPS53-218ENST00000575207 GABARAPL2P60520 117 aa9.71□□□□□ -0.86
VPS53-218ENST00000575207 CLPSL2Q6UWE3 100 aa9.71□□□□□ -0.86
VPS53-218ENST00000575207 PFDN5Q99471 154 aa9.71□□□□□ -0.86
VPS53-218ENST00000575207 CDIP1Q9H305 208 aa9.71□□□□□ -0.86
VPS53-218ENST00000575207 PRR34Q9NV39 138 aa9.71□□□□□ -0.86
VPS53-218ENST00000575207 A0A087WWL8 130 aa9.7□□□□□ -0.86
VPS53-218ENST00000575207 METTL15P1P0C7V9 234 aa9.7□□□□□ -0.86
VPS53-218ENST00000575207 PTH2Q96A98 100 aa9.7□□□□□ -0.86
VPS53-218ENST00000575207 RABL2BQ9UNT1 228 aa9.7□□□□□ -0.86
VPS53-218ENST00000575207 FER1L6-AS1Q8NA97 138 aa9.69□□□□□ -0.86
VPS53-218ENST00000575207 PRRT1Q99946 306 aa9.69□□□□□ -0.86
VPS53-218ENST00000575207 VCX3BQ9H321 246 aa9.69□□□□□ -0.86
VPS53-218ENST00000575207 A0A096LNI7 61 aa9.68□□□□□ -0.86
VPS53-218ENST00000575207 TRAV1-1A0A0B4J248 108 aa9.68□□□□□ -0.86
VPS53-218ENST00000575207 HPGDSO60760 199 aa9.68□□□□□ -0.86
VPS53-218ENST00000575207 CAMLGP49069 296 aa9.68□□□□□ -0.86
VPS53-218ENST00000575207 MIC13Q5XKP0 118 aa9.68□□□□□ -0.86
VPS53-218ENST00000575207 TMEM14EPQ6UXP3 125 aa9.68□□□□□ -0.86
VPS53-218ENST00000575207 C9orf85Q96MD7 179 aa9.68□□□□□ -0.86
VPS53-218ENST00000575207 A8MWV9 139 aa9.67□□□□□ -0.86
VPS53-218ENST00000575207 RPS10P46783 165 aaKnown RBP9.67□□□□□ -0.86
VPS53-218ENST00000575207 CSN1S1P47710 185 aa9.67□□□□□ -0.86
VPS53-218ENST00000575207 DIRC1Q969H9 104 aa9.67□□□□□ -0.86
VPS53-218ENST00000575207 CNBD2Q96M20 576 aa9.67□□□□□ -0.86
VPS53-218ENST00000575207 SCGB3A2Q96PL1 93 aa9.67□□□□□ -0.86
VPS53-218ENST00000575207 LINC00474Q9P2X8 69 aa9.67□□□□□ -0.86
VPS53-218ENST00000575207 TRBV6-8A0A0A6YYG3 113 aa9.66□□□□□ -0.86
VPS53-218ENST00000575207 CRYGAP11844 174 aa9.66□□□□□ -0.86
VPS53-218ENST00000575207 LINC00269Q8N2A0 174 aa9.66□□□□□ -0.86
VPS53-218ENST00000575207 DYNC2LI1Q8TCX1 351 aa9.66□□□□□ -0.86
VPS53-218ENST00000575207 SYNE2Q8WXH0 6885 aaKnown RBP9.65□□□□□ -0.86
VPS53-218ENST00000575207 FAM25AB3EWG3 89 aa9.65□□□□□ -0.86
VPS53-218ENST00000575207 FAM25CB3EWG5 89 aa9.65□□□□□ -0.86
VPS53-218ENST00000575207 FAM25GB3EWG6 89 aa9.65□□□□□ -0.86
VPS53-218ENST00000575207 KRTAP1-4P0C5Y4 121 aa9.65□□□□□ -0.86
VPS53-218ENST00000575207 CFC1BP0CG36 223 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms