RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TRBV19A0A075B6N1 114 aa11.51□□□□□ -0.57
CLK3-227ENST00000570296 INMT-MINDY4F8WBC2 141 aa11.51□□□□□ -0.57
CLK3-227ENST00000570296 PANO1I0J062 215 aa11.51□□□□□ -0.57
CLK3-227ENST00000570296 RRAS2P62070 204 aaPredicted RBP11.51□□□□□ -0.57
CLK3-227ENST00000570296 AGPAT2O15120 278 aa11.5□□□□□ -0.57
CLK3-227ENST00000570296 RAB31Q13636 194 aa11.5□□□□□ -0.57
CLK3-227ENST00000570296 RGS21Q2M5E4 152 aa11.5□□□□□ -0.57
CLK3-227ENST00000570296 ATRAIDQ6UW56 229 aa11.5□□□□□ -0.57
CLK3-227ENST00000570296 DNAJC30Q96LL9 226 aa11.5□□□□□ -0.57
CLK3-227ENST00000570296 MGAT4CQ9UBM8 478 aa11.5□□□□□ -0.57
CLK3-227ENST00000570296 IGKV2-40A0A087WW87 121 aaPredicted RBP11.49□□□□□ -0.57
CLK3-227ENST00000570296 CIDEAO60543 219 aa11.49□□□□□ -0.57
CLK3-227ENST00000570296 IGKV2D-40P01614 121 aaPredicted RBP11.49□□□□□ -0.57
CLK3-227ENST00000570296 PDE6HQ13956 83 aa11.49□□□□□ -0.57
CLK3-227ENST00000570296 ZNF266Q14584 549 aa11.49□□□□□ -0.57
CLK3-227ENST00000570296 DGAT2L7PQ6IED9 249 aa11.49□□□□□ -0.57
CLK3-227ENST00000570296 FAM159AQ6UWV7 190 aa11.49□□□□□ -0.57
CLK3-227ENST00000570296 C9orf163Q8N9P6 203 aa11.49□□□□□ -0.57
CLK3-227ENST00000570296 ZC2HC1AQ96GY0 325 aa11.49□□□□□ -0.57
CLK3-227ENST00000570296 NDUFB4O95168 129 aa11.48□□□□□ -0.57
CLK3-227ENST00000570296 HOXB5P09067 269 aa11.48□□□□□ -0.57
CLK3-227ENST00000570296 ZNF138P52744 262 aa11.48□□□□□ -0.57
CLK3-227ENST00000570296 CIRBPQ14011 172 aaKnown RBP11.48□□□□□ -0.57
CLK3-227ENST00000570296 LCE2AQ5TA79 106 aaPredicted RBP11.48□□□□□ -0.57
CLK3-227ENST00000570296 MITD1Q8WV92 249 aa11.48□□□□□ -0.57
CLK3-227ENST00000570296 SEC22CQ9BRL7 303 aa11.48□□□□□ -0.57
CLK3-227ENST00000570296 MARVELD1Q9BSK0 173 aa11.48□□□□□ -0.57
CLK3-227ENST00000570296 WDR73Q6P4I2 378 aa11.47□□□□□ -0.57
CLK3-227ENST00000570296 C12orf45Q8N5I9 185 aaPredicted RBP11.47□□□□□ -0.57
CLK3-227ENST00000570296 OR10G9Q8NGN4 311 aa11.47□□□□□ -0.57
CLK3-227ENST00000570296 PSENENQ9NZ42 101 aa11.47□□□□□ -0.57
CLK3-227ENST00000570296 TIMM9Q9Y5J7 89 aa11.47□□□□□ -0.57
CLK3-227ENST00000570296 URGCP-MRPS24S4R325 110 aa11.47□□□□□ -0.57
CLK3-227ENST00000570296 A0A087WWC5 75 aa11.46□□□□□ -0.57
CLK3-227ENST00000570296 Q6AWC8 147 aa11.46□□□□□ -0.57
CLK3-227ENST00000570296 SDIM1Q6ZPB5 146 aa11.46□□□□□ -0.57
CLK3-227ENST00000570296 UBE2WQ96B02 151 aa11.46□□□□□ -0.57
CLK3-227ENST00000570296 AAMDCQ9H7C9 122 aa11.46□□□□□ -0.57
CLK3-227ENST00000570296 KLK12Q9UKR0 248 aa11.46□□□□□ -0.57
CLK3-227ENST00000570296 NIT1Q86X76 327 aa11.45□□□□□ -0.58
CLK3-227ENST00000570296 EXOC3-AS1Q8N2X6 119 aa11.45□□□□□ -0.58
CLK3-227ENST00000570296 Q8TAT8 98 aa11.45□□□□□ -0.58
CLK3-227ENST00000570296 TMEM14CQ9P0S9 112 aa11.45□□□□□ -0.58
CLK3-227ENST00000570296 C5orf51A6NDU8 294 aa11.44□□□□□ -0.58
CLK3-227ENST00000570296 TMEM14EPQ6UXP3 125 aa11.44□□□□□ -0.58
CLK3-227ENST00000570296 DPPA3Q6W0C5 159 aa11.44□□□□□ -0.58
CLK3-227ENST00000570296 Q6ZRG5 221 aa11.44□□□□□ -0.58
CLK3-227ENST00000570296 OR1L4Q8NGR5 311 aa11.44□□□□□ -0.58
CLK3-227ENST00000570296 MGST2Q99735 147 aa11.44□□□□□ -0.58
CLK3-227ENST00000570296 FAM25EA8MYX2 175 aa11.43□□□□□ -0.58
CLK3-227ENST00000570296 SSNA1O43805 119 aa11.43□□□□□ -0.58
CLK3-227ENST00000570296 METTL15P1P0C7V9 234 aa11.43□□□□□ -0.58
CLK3-227ENST00000570296 RPL19P84098 196 aaKnown RBP11.43□□□□□ -0.58
CLK3-227ENST00000570296 ID3Q02535 119 aa11.43□□□□□ -0.58
CLK3-227ENST00000570296 CFAP126Q5VTH2 177 aa11.43□□□□□ -0.58
CLK3-227ENST00000570296 RNF185Q96GF1 192 aa11.43□□□□□ -0.58
CLK3-227ENST00000570296 SMIM8Q96KF7 97 aa11.43□□□□□ -0.58
CLK3-227ENST00000570296 PFDN5Q99471 154 aa11.43□□□□□ -0.58
CLK3-227ENST00000570296 USP17L23D6RBM5 183 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 LINC00694P0DN24 101 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 MGST1P10620 155 aaKnown RBP11.42□□□□□ -0.58
CLK3-227ENST00000570296 Q0VG73 95 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 ELOBQ15370 118 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 IAH1Q2TAA2 248 aaPredicted RBP11.42□□□□□ -0.58
CLK3-227ENST00000570296 REG3GQ6UW15 175 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 CYB561D1Q8N8Q1 229 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 GGACTQ9BVM4 153 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 C1orf43Q9BWL3 253 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 SLC39A9Q9NUM3 307 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 GSKIPQ9P0R6 139 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 KIF25-AS1Q9Y6Z4 181 aa11.42□□□□□ -0.58
CLK3-227ENST00000570296 PHOX2AO14813 284 aa11.41□□□□□ -0.58
CLK3-227ENST00000570296 PRSS1P07477 247 aa11.41□□□□□ -0.58
CLK3-227ENST00000570296 C7orf33Q8WU49 177 aa11.41□□□□□ -0.58
CLK3-227ENST00000570296 ATP5SQ99766 215 aa11.41□□□□□ -0.58
CLK3-227ENST00000570296 CHCHD7Q9BUK0 85 aa11.41□□□□□ -0.58
CLK3-227ENST00000570296 NAGKQ9UJ70 344 aa11.41□□□□□ -0.58
CLK3-227ENST00000570296 IGHV3-73A0A0B4J1V6 119 aa11.4□□□□□ -0.58
CLK3-227ENST00000570296 CCSO14618 274 aa11.4□□□□□ -0.58
CLK3-227ENST00000570296 GNRH2O43555 120 aa11.4□□□□□ -0.58
CLK3-227ENST00000570296 SSSCA1O60232 199 aa11.4□□□□□ -0.58
CLK3-227ENST00000570296 SCGB1D2O95969 90 aa11.39□□□□□ -0.59
CLK3-227ENST00000570296 CAMLGP49069 296 aa11.39□□□□□ -0.59
CLK3-227ENST00000570296 ZNF876PQ49A33 203 aa11.39□□□□□ -0.59
CLK3-227ENST00000570296 ALG5Q9Y673 324 aa11.39□□□□□ -0.59
CLK3-227ENST00000570296 A0A087WYN8 130 aa11.38□□□□□ -0.59
CLK3-227ENST00000570296 C7orf66A4D0T2 115 aa11.38□□□□□ -0.59
CLK3-227ENST00000570296 RBAKDNA6NC62 111 aa11.38□□□□□ -0.59
CLK3-227ENST00000570296 PYYP10082 97 aa11.38□□□□□ -0.59
CLK3-227ENST00000570296 LENEPQ9Y5L5 61 aa11.38□□□□□ -0.59
CLK3-227ENST00000570296 A0A087WX48 190 aa11.37□□□□□ -0.59
CLK3-227ENST00000570296 GAGE12JA6NER3 117 aa11.37□□□□□ -0.59
CLK3-227ENST00000570296 TYMSP04818 313 aa11.37□□□□□ -0.59
CLK3-227ENST00000570296 PRR3P79522 188 aaKnown RBP11.37□□□□□ -0.59
CLK3-227ENST00000570296 CYCSP99999 105 aaKnown RBP11.37□□□□□ -0.59
CLK3-227ENST00000570296 GAGE1Q13065 139 aa11.37□□□□□ -0.59
CLK3-227ENST00000570296 GAGE4Q13068 117 aa11.37□□□□□ -0.59
CLK3-227ENST00000570296 GAGE5Q13069 117 aa11.37□□□□□ -0.59
CLK3-227ENST00000570296 GAGE13Q4V321 117 aa11.37□□□□□ -0.59
CLK3-227ENST00000570296 MIC13Q5XKP0 118 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms