RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SVEP1Q4LDE5 3571 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 H7C2G1 150 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 F6UB75 175 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 SAA4P35542 130 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 UFSP1Q6NVU6 142 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 CEND1Q8N111 149 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 OR11H6Q8NGC7 330 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 EEF1AKMT3Q96AZ1 226 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 CHTOPQ9Y3Y2 248 aaKnown RBP11.18□□□□□ -0.62
VPS35-210ENST00000568784 NACAE9PAV3 2078 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 MYO9AB2RTY4 2548 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 OVOL3O00110 214 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 SIVA1O15304 175 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 BUB3O43684 328 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 NPBQ8NG41 125 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 SLC50A1Q9BRV3 221 aa11.18□□□□□ -0.62
VPS35-210ENST00000568784 ZFP36P26651 326 aaKnown RBP11.17□□□□□ -0.62
VPS35-210ENST00000568784 ATP5G2Q06055 141 aa11.17□□□□□ -0.62
VPS35-210ENST00000568784 DPF1Q92782 380 aa11.17□□□□□ -0.62
VPS35-210ENST00000568784 RPL39LQ96EH5 51 aaKnown RBP11.17□□□□□ -0.62
VPS35-210ENST00000568784 OR10J6PQ8NGY7 276 aa11.17□□□□□ -0.62
VPS35-210ENST00000568784 SETD2Q9BYW2 2564 aaPredicted RBP11.17□□□□□ -0.62
VPS35-210ENST00000568784 PTPN13Q12923 2485 aa11.17□□□□□ -0.62
VPS35-210ENST00000568784 CDSNQ15517 529 aa11.17□□□□□ -0.62
VPS35-210ENST00000568784 BRD3OSQ6XYD6 125 aa11.17□□□□□ -0.62
VPS35-210ENST00000568784 SCGB1C2P0DMR2 95 aa11.16□□□□□ -0.62
VPS35-210ENST00000568784 HTN1P15515 57 aa11.16□□□□□ -0.62
VPS35-210ENST00000568784 ZNF815PA8K554 130 aa11.16□□□□□ -0.62
VPS35-210ENST00000568784 PF4V1P10720 104 aa11.16□□□□□ -0.62
VPS35-210ENST00000568784 Q5PR19 223 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 Q8N9W7 124 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 TLN2Q9Y4G6 2542 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 M0R1W7 72 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 IGHG4P01861 327 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 AZU1P20160 251 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 C12orf74Q32Q52 190 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 GAGE13Q4V321 117 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 HHLA3Q9XRX5 114 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 PSMB2P49721 201 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 PGPEP1Q9NXJ5 209 aa11.15□□□□□ -0.62
VPS35-210ENST00000568784 IGLL5B9A064 214 aa11.14□□□□□ -0.63
VPS35-210ENST00000568784 RAB9AP51151 201 aa11.14□□□□□ -0.63
VPS35-210ENST00000568784 TMEM170BQ5T4T1 132 aa11.14□□□□□ -0.63
VPS35-210ENST00000568784 SIGMAR1Q99720 223 aa11.14□□□□□ -0.63
VPS35-210ENST00000568784 SMPXQ9UHP9 88 aa11.14□□□□□ -0.63
VPS35-210ENST00000568784 ASIPP42127 132 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 PAX8Q06710 450 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 LINC01559Q495D7 138 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 KLHL30-AS1Q8NEE0 82 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 IGHV3-64A0A075B6Q5 118 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 H7C1H1 209 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 GATD1Q8NB37 220 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 SMIM2Q9BVW6 85 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 ZNF256Q9Y2P7 627 aaPredicted RBP11.13□□□□□ -0.63
VPS35-210ENST00000568784 DCHS2Q6V1P9 2916 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 WNK1Q9H4A3 2382 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 USP9XQ93008 2570 aaPredicted RBP11.13□□□□□ -0.63
VPS35-210ENST00000568784 C2orf66Q6UXQ4 117 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 MSRB2Q9Y3D2 182 aa11.13□□□□□ -0.63
VPS35-210ENST00000568784 A0A087WWL8 130 aa11.12□□□□□ -0.63
VPS35-210ENST00000568784 A0A087WX48 190 aa11.12□□□□□ -0.63
VPS35-210ENST00000568784 GNRH2O43555 120 aa11.12□□□□□ -0.63
VPS35-210ENST00000568784 SLC25A16P16260 332 aa11.12□□□□□ -0.63
VPS35-210ENST00000568784 SUMO2P61956 95 aaKnown RBP11.12□□□□□ -0.63
VPS35-210ENST00000568784 FAM110DQ8TAY7 271 aaPredicted RBP11.12□□□□□ -0.63
VPS35-210ENST00000568784 HOXA3O43365 443 aaPredicted RBP11.12□□□□□ -0.63
VPS35-210ENST00000568784 HLA-DRB4P13762 266 aa11.12□□□□□ -0.63
VPS35-210ENST00000568784 LY6G5BQ8NDX9 201 aa11.12□□□□□ -0.63
VPS35-210ENST00000568784 BPESC1Q9GZL8 116 aa11.12□□□□□ -0.63
VPS35-210ENST00000568784 HLA-DRB4X5D2U9 266 aa11.12□□□□□ -0.63
VPS35-210ENST00000568784 PRADC1Q9BSG0 188 aa11.12□□□□□ -0.63
VPS35-210ENST00000568784 PLNP26678 52 aa11.11□□□□□ -0.63
VPS35-210ENST00000568784 ANXA2RQ3ZCQ2 193 aa11.11□□□□□ -0.63
VPS35-210ENST00000568784 CCDC140Q96MF4 163 aa11.11□□□□□ -0.63
VPS35-210ENST00000568784 LINC01549A6NIU2 74 aa11.11□□□□□ -0.63
VPS35-210ENST00000568784 F8VRH5 84 aa11.11□□□□□ -0.63
VPS35-210ENST00000568784 PRR9Q5T870 116 aa11.1□□□□□ -0.63
VPS35-210ENST00000568784 POLQO75417 2590 aa11.1□□□□□ -0.63
VPS35-210ENST00000568784 COL12A1Q99715 3063 aa11.1□□□□□ -0.63
VPS35-210ENST00000568784 GAGE12HA6NDE8 117 aa11.1□□□□□ -0.63
VPS35-210ENST00000568784 ODF3BA8MYP8 253 aa11.1□□□□□ -0.63
VPS35-210ENST00000568784 TRBV12-3P01733 135 aa11.1□□□□□ -0.63
VPS35-210ENST00000568784 Q1RN00 199 aa11.1□□□□□ -0.63
VPS35-210ENST00000568784 ORMDL2Q53FV1 153 aa11.1□□□□□ -0.63
VPS35-210ENST00000568784 SPOCK3Q9BQ16 436 aa11.1□□□□□ -0.63
VPS35-210ENST00000568784 MINOS1Q5TGZ0 78 aa11.09□□□□□ -0.63
VPS35-210ENST00000568784 IGF2-ASQ6U949 168 aa11.09□□□□□ -0.63
VPS35-210ENST00000568784 FOXI2Q6ZQN5 318 aa11.09□□□□□ -0.63
VPS35-210ENST00000568784 MINOS1-NBL1R4GNA1 71 aa11.09□□□□□ -0.63
VPS35-210ENST00000568784 TRAV41A0A0B4J266 112 aa11.09□□□□□ -0.63
VPS35-210ENST00000568784 ZFAND3Q9H8U3 227 aa11.09□□□□□ -0.63
VPS35-210ENST00000568784 TRAV21A0A0B4J279 112 aa11.09□□□□□ -0.63
VPS35-210ENST00000568784 MYMXA0A1B0GTQ4 84 aa11.09□□□□□ -0.63
VPS35-210ENST00000568784 INSL3P51460 131 aa11.09□□□□□ -0.63
VPS35-210ENST00000568784 PRSS29PA6NIE9 313 aa11.08□□□□□ -0.64
VPS35-210ENST00000568784 UNQ9165/PRO28630Q6UXU0 137 aa11.08□□□□□ -0.64
VPS35-210ENST00000568784 DPH3P1Q9H4G8 78 aa11.08□□□□□ -0.64
VPS35-210ENST00000568784 JPT2Q9H910 190 aa11.08□□□□□ -0.64
VPS35-210ENST00000568784 HIGD1BQ9P298 99 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms