RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ALKAL2Q6UX46 152 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 CCDC28AQ8IWP9 274 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 TMEM183AQ8IXX5 376 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 EIF4E3Q8N5X7 224 aaKnown RBP9.76□□□□□ -0.85
CLN3-235ENST00000568497 NHLRC2Q8NBF2 726 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 PYGO2Q9BRQ0 406 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 NACAE9PAV3 2078 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 SCO2A0A1W2PP80 73 aa9.75□□□□□ -0.85
CLN3-235ENST00000568497 F5H768 121 aa9.75□□□□□ -0.85
CLN3-235ENST00000568497 FLI1Q01543 452 aaPredicted RBP9.75□□□□□ -0.85
CLN3-235ENST00000568497 CYB561D1Q8N8Q1 229 aa9.75□□□□□ -0.85
CLN3-235ENST00000568497 PCNPQ8WW12 178 aaKnown RBP9.75□□□□□ -0.85
CLN3-235ENST00000568497 GNG13Q9P2W3 67 aa9.75□□□□□ -0.85
CLN3-235ENST00000568497 TIMM8BQ9Y5J9 83 aaPredicted RBP9.75□□□□□ -0.85
CLN3-235ENST00000568497 LRP1BQ9NZR2 4599 aa9.75□□□□□ -0.85
CLN3-235ENST00000568497 TRGV1A0A0A0MS02 117 aa9.74□□□□□ -0.85
CLN3-235ENST00000568497 GCGP01275 180 aa9.74□□□□□ -0.85
CLN3-235ENST00000568497 HOXA5P20719 270 aa9.74□□□□□ -0.85
CLN3-235ENST00000568497 SLC51BQ86UW2 128 aa9.74□□□□□ -0.85
CLN3-235ENST00000568497 C20orf144Q9BQM9 153 aa9.74□□□□□ -0.85
CLN3-235ENST00000568497 ATG101Q9BSB4 218 aa9.74□□□□□ -0.85
CLN3-235ENST00000568497 ARL2-SNX15V9GYD0 113 aa9.74□□□□□ -0.85
CLN3-235ENST00000568497 A0A0J9YY99 117 aa9.73□□□□□ -0.85
CLN3-235ENST00000568497 LYRM9A8MSI8 78 aa9.73□□□□□ -0.85
CLN3-235ENST00000568497 SNURFLB1AK76 121 aa9.73□□□□□ -0.85
CLN3-235ENST00000568497 UMAD1C9J7I0 102 aa9.73□□□□□ -0.85
CLN3-235ENST00000568497 SULT1A2P50226 295 aa9.73□□□□□ -0.85
CLN3-235ENST00000568497 EIF5AP63241 154 aaKnown RBP9.73□□□□□ -0.85
CLN3-235ENST00000568497 Q6AWC8 147 aa9.73□□□□□ -0.85
CLN3-235ENST00000568497 Q86TA4 180 aa9.73□□□□□ -0.85
CLN3-235ENST00000568497 UBE2DNLQ8IWF7 75 aa9.73□□□□□ -0.85
CLN3-235ENST00000568497 TYMSP04818 313 aa9.72□□□□□ -0.85
CLN3-235ENST00000568497 CRIP1P50238 77 aa9.72□□□□□ -0.85
CLN3-235ENST00000568497 OR5I1Q13606 314 aa9.72□□□□□ -0.85
CLN3-235ENST00000568497 ZNF493Q6ZR52 646 aa9.72□□□□□ -0.85
CLN3-235ENST00000568497 TEX46H3BTG2 121 aa9.71□□□□□ -0.86
CLN3-235ENST00000568497 NMBP08949 121 aa9.71□□□□□ -0.86
CLN3-235ENST00000568497 ZC2HC1AQ96GY0 325 aa9.71□□□□□ -0.86
CLN3-235ENST00000568497 DERL1Q9BUN8 251 aa9.71□□□□□ -0.86
CLN3-235ENST00000568497 APOBP04114 4563 aaKnown RBP9.7□□□□□ -0.86
CLN3-235ENST00000568497 TMSB15BA0A087X1C1 80 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 TRAV21A0A0B4J279 112 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 IGHV3-16A0A0C4DH30 117 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 M0R036 132 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 SFTA3P0C7M3 94 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 AKR1C3P42330 323 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 TCL1AP56279 114 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 C1orf134Q5TEV5 83 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 FAM159AQ6UWV7 190 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 DPPA3Q6W0C5 159 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 LINC00612Q8N6U2 182 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 NDFIP1Q9BT67 221 aa9.7□□□□□ -0.86
CLN3-235ENST00000568497 IGKV3D-20A0A0C4DH25 116 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 GRIFINA4D1Z8 144 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 K7EQM0 130 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 SPINK4O60575 86 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 NUDT3O95989 172 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 ZNF415Q09FC8 603 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 SMUG1Q53HV7 270 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 Q6ZR54 194 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 ZNF680Q8NEM1 530 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 LINC00467Q9BRT7 94 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 NDUFAF3Q9BU61 184 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 LENEPQ9Y5L5 61 aa9.69□□□□□ -0.86
CLN3-235ENST00000568497 TRGV2A0A075B6R0 118 aa9.68□□□□□ -0.86
CLN3-235ENST00000568497 TRAV26-1A0A087WT03 109 aa9.68□□□□□ -0.86
CLN3-235ENST00000568497 TRBV7-9A0A0J9YWB2 115 aa9.68□□□□□ -0.86
CLN3-235ENST00000568497 RAB19A4D1S5 217 aa9.68□□□□□ -0.86
CLN3-235ENST00000568497 SH2D1AO60880 128 aa9.68□□□□□ -0.86
CLN3-235ENST00000568497 ATP5G1P05496 136 aa9.68□□□□□ -0.86
CLN3-235ENST00000568497 DAZ2Q13117 558 aaKnown RBP9.68□□□□□ -0.86
CLN3-235ENST00000568497 ARL6IP6Q8N6S5 226 aa9.68□□□□□ -0.86
CLN3-235ENST00000568497 DNAH5Q8TE73 4624 aa9.67□□□□□ -0.86
CLN3-235ENST00000568497 TEX48A0A1B0GUV7 120 aa9.67□□□□□ -0.86
CLN3-235ENST00000568497 SERTM2A0A1B0GWG4 89 aa9.67□□□□□ -0.86
CLN3-235ENST00000568497 C9JCJ5 164 aa9.67□□□□□ -0.86
CLN3-235ENST00000568497 UBE2G1P62253 170 aa9.67□□□□□ -0.86
CLN3-235ENST00000568497 RPL19P84098 196 aaKnown RBP9.67□□□□□ -0.86
CLN3-235ENST00000568497 HIST1H2BAQ96A08 127 aa9.67□□□□□ -0.86
CLN3-235ENST00000568497 IGHV3-73A0A0B4J1V6 119 aa9.66□□□□□ -0.86
CLN3-235ENST00000568497 PGPEP1LA6NFU8 196 aa9.66□□□□□ -0.86
CLN3-235ENST00000568497 EPM2AB3EWF7 344 aa9.66□□□□□ -0.86
CLN3-235ENST00000568497 INAFM2P0DMQ5 153 aa9.66□□□□□ -0.86
CLN3-235ENST00000568497 PPT1P50897 306 aa9.66□□□□□ -0.86
CLN3-235ENST00000568497 TNP2Q05952 138 aa9.66□□□□□ -0.86
CLN3-235ENST00000568497 EIF5AL1Q6IS14 154 aaKnown RBP9.66□□□□□ -0.86
CLN3-235ENST00000568497 ZNF479Q96JC4 524 aa9.66□□□□□ -0.86
CLN3-235ENST00000568497 SDF2L1Q9HCN8 221 aa9.66□□□□□ -0.86
CLN3-235ENST00000568497 TRGV11A0A075B6L2 103 aa9.65□□□□□ -0.86
CLN3-235ENST00000568497 A0A096LPF7 62 aa9.65□□□□□ -0.86
CLN3-235ENST00000568497 TRAV1-1A0A0B4J248 108 aa9.65□□□□□ -0.86
CLN3-235ENST00000568497 ORM1P02763 201 aa9.65□□□□□ -0.86
CLN3-235ENST00000568497 PFN1P07737 140 aaKnown RBP9.65□□□□□ -0.86
CLN3-235ENST00000568497 RAB5CP51148 216 aa9.65□□□□□ -0.86
CLN3-235ENST00000568497 IBA57Q5T440 356 aaKnown RBP9.65□□□□□ -0.86
CLN3-235ENST00000568497 PRR27Q6MZM9 219 aa9.65□□□□□ -0.86
CLN3-235ENST00000568497 VSIG2Q96IQ7 327 aa9.65□□□□□ -0.86
CLN3-235ENST00000568497 UBR4Q5T4S7 5183 aa9.64□□□□□ -0.87
CLN3-235ENST00000568497 MUC21A0A0G2JKD1 596 aa9.64□□□□□ -0.87
CLN3-235ENST00000568497 MUC21A0A140T8X8 626 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms