RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TVP23CQ96ET8 276 aa9.39□□□□□ -0.91
CLK3-216ENST00000564468 SGK494Q96LW2 274 aa9.39□□□□□ -0.91
CLK3-216ENST00000564468 TCEAL7Q9BRU2 100 aa9.39□□□□□ -0.91
CLK3-216ENST00000564468 SDF2L1Q9HCN8 221 aa9.39□□□□□ -0.91
CLK3-216ENST00000564468 VPS13DQ5THJ4 4388 aa9.38□□□□□ -0.91
CLK3-216ENST00000564468 TRAV26-1A0A087WT03 109 aa9.38□□□□□ -0.91
CLK3-216ENST00000564468 PEX7O00628 323 aa9.38□□□□□ -0.91
CLK3-216ENST00000564468 FHITP49789 147 aa9.38□□□□□ -0.91
CLK3-216ENST00000564468 CCL18P55774 89 aa9.38□□□□□ -0.91
CLK3-216ENST00000564468 LGALSLQ3ZCW2 172 aaPredicted RBP9.38□□□□□ -0.91
CLK3-216ENST00000564468 FAM213BQ8TBF2 198 aa9.38□□□□□ -0.91
CLK3-216ENST00000564468 MBD3L1Q8WWY6 194 aa9.38□□□□□ -0.91
CLK3-216ENST00000564468 MDFICQ9P1T7 246 aa9.38□□□□□ -0.91
CLK3-216ENST00000564468 DNAH6Q9C0G6 4158 aa9.37□□□□□ -0.91
CLK3-216ENST00000564468 GCGP01275 180 aa9.37□□□□□ -0.91
CLK3-216ENST00000564468 IGLV2-11P01706 119 aa9.37□□□□□ -0.91
CLK3-216ENST00000564468 PFN1P07737 140 aaKnown RBP9.37□□□□□ -0.91
CLK3-216ENST00000564468 HOXA5P20719 270 aa9.37□□□□□ -0.91
CLK3-216ENST00000564468 SFT2D1Q8WV19 159 aa9.37□□□□□ -0.91
CLK3-216ENST00000564468 C8orf49Q96NF6 230 aa9.37□□□□□ -0.91
CLK3-216ENST00000564468 MRPL16Q9NX20 251 aaKnown RBP9.37□□□□□ -0.91
CLK3-216ENST00000564468 RYR1P21817 5038 aa9.37□□□□□ -0.91
CLK3-216ENST00000564468 A0A0J9YY99 117 aa9.36□□□□□ -0.91
CLK3-216ENST00000564468 C1QBP02746 253 aa9.36□□□□□ -0.91
CLK3-216ENST00000564468 H2AFB1P0C5Y9 115 aa9.36□□□□□ -0.91
CLK3-216ENST00000564468 RAB5CP51148 216 aa9.36□□□□□ -0.91
CLK3-216ENST00000564468 CST9LP1Q5W188 147 aa9.36□□□□□ -0.91
CLK3-216ENST00000564468 RASL10AQ92737 203 aa9.36□□□□□ -0.91
CLK3-216ENST00000564468 IGHV3-16A0A0C4DH30 117 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 TEX46H3BTG2 121 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 M0R2P5 195 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 GNRH2O43555 120 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 TYMSP04818 313 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 UBE2G1P62253 170 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 AKAP14Q86UN6 197 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 FMC1Q96HJ9 113 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 PRO0255Q9UI72 69 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 ZFP30Q9Y2G7 519 aa9.35□□□□□ -0.91
CLK3-216ENST00000564468 TRAV34A0A0B4J273 112 aa9.34□□□□□ -0.91
CLK3-216ENST00000564468 FABP5P3A8MUU1 101 aa9.34□□□□□ -0.91
CLK3-216ENST00000564468 PAGE4O60829 102 aa9.34□□□□□ -0.91
CLK3-216ENST00000564468 ZNF80P51504 273 aaPredicted RBP9.34□□□□□ -0.91
CLK3-216ENST00000564468 LINC00479Q96M42 142 aa9.34□□□□□ -0.91
CLK3-216ENST00000564468 HECTD4Q9Y4D8 3996 aa9.34□□□□□ -0.91
CLK3-216ENST00000564468 TRGV4A0A0C4DH28 118 aa9.33□□□□□ -0.92
CLK3-216ENST00000564468 PAX4O43316 350 aa9.33□□□□□ -0.92
CLK3-216ENST00000564468 IGHV3-53P01767 116 aa9.33□□□□□ -0.92
CLK3-216ENST00000564468 S100A9P06702 114 aaKnown RBP9.33□□□□□ -0.92
CLK3-216ENST00000564468 Q86TA4 180 aa9.33□□□□□ -0.92
CLK3-216ENST00000564468 SLC51BQ86UW2 128 aa9.33□□□□□ -0.92
CLK3-216ENST00000564468 HHLA3Q9XRX5 114 aa9.33□□□□□ -0.92
CLK3-216ENST00000564468 IGLV2-18A0A075B6J9 118 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 TRAV4A0A0B4J268 109 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 TRBV6-1A0A0K0K1D8 114 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 M0R2N4 97 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 CIDEAO60543 219 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 AKR1C3P42330 323 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 LINC00336Q6ZUF6 198 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 OR4C5Q8NGB2 326 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 VSIG2Q96IQ7 327 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 LINC00588Q9Y4M8 146 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 ICOSQ9Y6W8 199 aa9.32□□□□□ -0.92
CLK3-216ENST00000564468 hCG_2014768A0A024R1R8 64 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 A0A1B0GV50 99 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 S100A4P26447 101 aaKnown RBP9.31□□□□□ -0.92
CLK3-216ENST00000564468 SULT1A2P50226 295 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 CRYBA4P53673 196 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 FHL2Q14192 279 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 MRPL23Q16540 153 aaKnown RBP9.31□□□□□ -0.92
CLK3-216ENST00000564468 SOHLH1Q5JUK2 328 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 COX8CQ7Z4L0 72 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 ZNRF2Q8NHG8 242 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 MANBALQ9NQG1 85 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 C11orf21Q9P2W6 132 aa9.31□□□□□ -0.92
CLK3-216ENST00000564468 A0A096LPF7 62 aa9.3□□□□□ -0.92
CLK3-216ENST00000564468 TRAV1-1A0A0B4J248 108 aa9.3□□□□□ -0.92
CLK3-216ENST00000564468 ORM1P02763 201 aa9.3□□□□□ -0.92
CLK3-216ENST00000564468 Q6ZR54 194 aa9.3□□□□□ -0.92
CLK3-216ENST00000564468 PTH2Q96A98 100 aa9.3□□□□□ -0.92
CLK3-216ENST00000564468 ZNF479Q96JC4 524 aa9.3□□□□□ -0.92
CLK3-216ENST00000564468 TXNDC17Q9BRA2 123 aa9.3□□□□□ -0.92
CLK3-216ENST00000564468 DNAH10Q8IVF4 4471 aa9.3□□□□□ -0.92
CLK3-216ENST00000564468 B4DEV8 164 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 LTAP01374 205 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 SFTA3P0C7M3 94 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 ASIPP42127 132 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 ESRGQ1W209 222 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 ZNF876PQ49A33 203 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 FAM162BQ5T6X4 162 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 PCNPQ8WW12 178 aaKnown RBP9.29□□□□□ -0.92
CLK3-216ENST00000564468 C9orf85Q96MD7 179 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 UPK3BQ9BT76 320 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 MRPS16Q9Y3D3 137 aaKnown RBP9.29□□□□□ -0.92
CLK3-216ENST00000564468 KIAA1109Q2LD37 5005 aa9.29□□□□□ -0.92
CLK3-216ENST00000564468 IGKV3D-20A0A0C4DH25 116 aa9.28□□□□□ -0.92
CLK3-216ENST00000564468 C9JCJ5 164 aa9.28□□□□□ -0.92
CLK3-216ENST00000564468 IFNA1P01562 189 aa9.28□□□□□ -0.92
CLK3-216ENST00000564468 PIK3CD-AS1Q5SR53 167 aa9.28□□□□□ -0.92
CLK3-216ENST00000564468 ZC2HC1AQ96GY0 325 aa9.28□□□□□ -0.92
CLK3-216ENST00000564468 Q9H8V8 135 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms