RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TVP23CQ96ET8 276 aa9.39□□□□□ -0.91
CLK3-213ENST00000563842 SGK494Q96LW2 274 aa9.39□□□□□ -0.91
CLK3-213ENST00000563842 TCEAL7Q9BRU2 100 aa9.39□□□□□ -0.91
CLK3-213ENST00000563842 SDF2L1Q9HCN8 221 aa9.39□□□□□ -0.91
CLK3-213ENST00000563842 VPS13DQ5THJ4 4388 aa9.38□□□□□ -0.91
CLK3-213ENST00000563842 TRAV26-1A0A087WT03 109 aa9.38□□□□□ -0.91
CLK3-213ENST00000563842 PEX7O00628 323 aa9.38□□□□□ -0.91
CLK3-213ENST00000563842 FHITP49789 147 aa9.38□□□□□ -0.91
CLK3-213ENST00000563842 CCL18P55774 89 aa9.38□□□□□ -0.91
CLK3-213ENST00000563842 LGALSLQ3ZCW2 172 aaPredicted RBP9.38□□□□□ -0.91
CLK3-213ENST00000563842 FAM213BQ8TBF2 198 aa9.38□□□□□ -0.91
CLK3-213ENST00000563842 MBD3L1Q8WWY6 194 aa9.38□□□□□ -0.91
CLK3-213ENST00000563842 MDFICQ9P1T7 246 aa9.38□□□□□ -0.91
CLK3-213ENST00000563842 DNAH6Q9C0G6 4158 aa9.37□□□□□ -0.91
CLK3-213ENST00000563842 GCGP01275 180 aa9.37□□□□□ -0.91
CLK3-213ENST00000563842 IGLV2-11P01706 119 aa9.37□□□□□ -0.91
CLK3-213ENST00000563842 PFN1P07737 140 aaKnown RBP9.37□□□□□ -0.91
CLK3-213ENST00000563842 HOXA5P20719 270 aa9.37□□□□□ -0.91
CLK3-213ENST00000563842 SFT2D1Q8WV19 159 aa9.37□□□□□ -0.91
CLK3-213ENST00000563842 C8orf49Q96NF6 230 aa9.37□□□□□ -0.91
CLK3-213ENST00000563842 MRPL16Q9NX20 251 aaKnown RBP9.37□□□□□ -0.91
CLK3-213ENST00000563842 A0A0J9YY99 117 aa9.36□□□□□ -0.91
CLK3-213ENST00000563842 C1QBP02746 253 aa9.36□□□□□ -0.91
CLK3-213ENST00000563842 H2AFB1P0C5Y9 115 aa9.36□□□□□ -0.91
CLK3-213ENST00000563842 RAB5CP51148 216 aa9.36□□□□□ -0.91
CLK3-213ENST00000563842 CST9LP1Q5W188 147 aa9.36□□□□□ -0.91
CLK3-213ENST00000563842 RASL10AQ92737 203 aa9.36□□□□□ -0.91
CLK3-213ENST00000563842 IGHV3-16A0A0C4DH30 117 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 TEX46H3BTG2 121 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 M0R2P5 195 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 GNRH2O43555 120 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 TYMSP04818 313 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 UBE2G1P62253 170 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 AKAP14Q86UN6 197 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 FMC1Q96HJ9 113 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 PRO0255Q9UI72 69 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 ZFP30Q9Y2G7 519 aa9.35□□□□□ -0.91
CLK3-213ENST00000563842 HERC2O95714 4834 aa9.34□□□□□ -0.91
CLK3-213ENST00000563842 TRAV34A0A0B4J273 112 aa9.34□□□□□ -0.91
CLK3-213ENST00000563842 FABP5P3A8MUU1 101 aa9.34□□□□□ -0.91
CLK3-213ENST00000563842 PAGE4O60829 102 aa9.34□□□□□ -0.91
CLK3-213ENST00000563842 ZNF80P51504 273 aaPredicted RBP9.34□□□□□ -0.91
CLK3-213ENST00000563842 LINC00479Q96M42 142 aa9.34□□□□□ -0.91
CLK3-213ENST00000563842 TRGV4A0A0C4DH28 118 aa9.33□□□□□ -0.92
CLK3-213ENST00000563842 PAX4O43316 350 aa9.33□□□□□ -0.92
CLK3-213ENST00000563842 IGHV3-53P01767 116 aa9.33□□□□□ -0.92
CLK3-213ENST00000563842 S100A9P06702 114 aaKnown RBP9.33□□□□□ -0.92
CLK3-213ENST00000563842 Q86TA4 180 aa9.33□□□□□ -0.92
CLK3-213ENST00000563842 SLC51BQ86UW2 128 aa9.33□□□□□ -0.92
CLK3-213ENST00000563842 HHLA3Q9XRX5 114 aa9.33□□□□□ -0.92
CLK3-213ENST00000563842 IGLV2-18A0A075B6J9 118 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 TRAV4A0A0B4J268 109 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 TRBV6-1A0A0K0K1D8 114 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 M0R2N4 97 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 CIDEAO60543 219 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 AKR1C3P42330 323 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 LINC00336Q6ZUF6 198 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 OR4C5Q8NGB2 326 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 VSIG2Q96IQ7 327 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 LINC00588Q9Y4M8 146 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 ICOSQ9Y6W8 199 aa9.32□□□□□ -0.92
CLK3-213ENST00000563842 hCG_2014768A0A024R1R8 64 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 A0A1B0GV50 99 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 S100A4P26447 101 aaKnown RBP9.31□□□□□ -0.92
CLK3-213ENST00000563842 SULT1A2P50226 295 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 CRYBA4P53673 196 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 FHL2Q14192 279 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 MRPL23Q16540 153 aaKnown RBP9.31□□□□□ -0.92
CLK3-213ENST00000563842 SOHLH1Q5JUK2 328 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 COX8CQ7Z4L0 72 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 ZNRF2Q8NHG8 242 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 MANBALQ9NQG1 85 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 C11orf21Q9P2W6 132 aa9.31□□□□□ -0.92
CLK3-213ENST00000563842 A0A096LPF7 62 aa9.3□□□□□ -0.92
CLK3-213ENST00000563842 TRAV1-1A0A0B4J248 108 aa9.3□□□□□ -0.92
CLK3-213ENST00000563842 ORM1P02763 201 aa9.3□□□□□ -0.92
CLK3-213ENST00000563842 Q6ZR54 194 aa9.3□□□□□ -0.92
CLK3-213ENST00000563842 PTH2Q96A98 100 aa9.3□□□□□ -0.92
CLK3-213ENST00000563842 ZNF479Q96JC4 524 aa9.3□□□□□ -0.92
CLK3-213ENST00000563842 TXNDC17Q9BRA2 123 aa9.3□□□□□ -0.92
CLK3-213ENST00000563842 B4DEV8 164 aa9.29□□□□□ -0.92
CLK3-213ENST00000563842 LTAP01374 205 aa9.29□□□□□ -0.92
CLK3-213ENST00000563842 SFTA3P0C7M3 94 aa9.29□□□□□ -0.92
CLK3-213ENST00000563842 ASIPP42127 132 aa9.29□□□□□ -0.92
CLK3-213ENST00000563842 ESRGQ1W209 222 aa9.29□□□□□ -0.92
CLK3-213ENST00000563842 ZNF876PQ49A33 203 aa9.29□□□□□ -0.92
CLK3-213ENST00000563842 FAM162BQ5T6X4 162 aa9.29□□□□□ -0.92
CLK3-213ENST00000563842 PCNPQ8WW12 178 aaKnown RBP9.29□□□□□ -0.92
CLK3-213ENST00000563842 C9orf85Q96MD7 179 aa9.29□□□□□ -0.92
CLK3-213ENST00000563842 UPK3BQ9BT76 320 aa9.29□□□□□ -0.92
CLK3-213ENST00000563842 MRPS16Q9Y3D3 137 aaKnown RBP9.29□□□□□ -0.92
CLK3-213ENST00000563842 IGKV3D-20A0A0C4DH25 116 aa9.28□□□□□ -0.92
CLK3-213ENST00000563842 C9JCJ5 164 aa9.28□□□□□ -0.92
CLK3-213ENST00000563842 IFNA1P01562 189 aa9.28□□□□□ -0.92
CLK3-213ENST00000563842 PIK3CD-AS1Q5SR53 167 aa9.28□□□□□ -0.92
CLK3-213ENST00000563842 ZC2HC1AQ96GY0 325 aa9.28□□□□□ -0.92
CLK3-213ENST00000563842 Q9H8V8 135 aa9.28□□□□□ -0.92
CLK3-213ENST00000563842 GNG13Q9P2W3 67 aa9.28□□□□□ -0.92
CLK3-213ENST00000563842 NBDYA0A0U1RRE5 68 aa9.27□□□□□ -0.93
CLK3-213ENST00000563842 SCO2A0A1W2PP80 73 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms