RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 LINC01559Q495D7 138 aa13.43□□□□□ -0.26
COMMD4-208ENST00000563220 EBLN2Q6P2I7 272 aa13.43□□□□□ -0.26
COMMD4-208ENST00000563220 ZNF256Q9Y2P7 627 aaPredicted RBP13.43□□□□□ -0.26
COMMD4-208ENST00000563220 TRAV25A0A0B4J276 109 aa13.42□□□□□ -0.26
COMMD4-208ENST00000563220 GRIFINA4D1Z8 144 aa13.42□□□□□ -0.26
COMMD4-208ENST00000563220 HLA-DQA1P01909 254 aa13.42□□□□□ -0.26
COMMD4-208ENST00000563220 APRG1Q8IVJ8 170 aa13.42□□□□□ -0.26
COMMD4-208ENST00000563220 SPAG8Q99932 426 aaPredicted RBP13.42□□□□□ -0.26
COMMD4-208ENST00000563220 SAP30O75446 220 aa13.42□□□□□ -0.26
COMMD4-208ENST00000563220 GPX1P07203 203 aa13.42□□□□□ -0.26
COMMD4-208ENST00000563220 OR10J3Q5JRS4 329 aa13.42□□□□□ -0.26
COMMD4-208ENST00000563220 FOXI2Q6ZQN5 318 aa13.42□□□□□ -0.26
COMMD4-208ENST00000563220 ATP5L2Q7Z4Y8 100 aa13.42□□□□□ -0.26
COMMD4-208ENST00000563220 IGKV3-20P01619 116 aa13.41□□□□□ -0.26
COMMD4-208ENST00000563220 RNASE4P34096 147 aaKnown RBP13.41□□□□□ -0.26
COMMD4-208ENST00000563220 CAMPP49913 170 aa13.41□□□□□ -0.26
COMMD4-208ENST00000563220 RPS20P60866 119 aaKnown RBP13.41□□□□□ -0.26
COMMD4-208ENST00000563220 ZNF124Q15973 351 aa13.41□□□□□ -0.26
COMMD4-208ENST00000563220 TPPP3Q9BW30 176 aa13.41□□□□□ -0.26
COMMD4-208ENST00000563220 KNCNA6PVL3 124 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 KLLNB2CW77 178 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 SERF1AO75920 110 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 ARMS2P0C7Q2 107 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 LYZL1Q6UWQ5 148 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 NAGKQ9UJ70 344 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 OR4C46A6NHA9 309 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 BAGE3Q86Y29 109 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 CITED1Q99966 193 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 MAP6D1Q9H9H5 199 aa13.4□□□□□ -0.26
COMMD4-208ENST00000563220 ZMAT5Q9UDW3 170 aaKnown RBP13.4□□□□□ -0.26
COMMD4-208ENST00000563220 TEP1Q99973 2627 aaKnown RBP13.39□□□□□ -0.27
COMMD4-208ENST00000563220 TRAV21A0A0B4J279 112 aa13.39□□□□□ -0.27
COMMD4-208ENST00000563220 PF4P02776 101 aa13.39□□□□□ -0.27
COMMD4-208ENST00000563220 IGLC6P0CF74 106 aa13.39□□□□□ -0.27
COMMD4-208ENST00000563220 HBBP68871 147 aa13.39□□□□□ -0.27
COMMD4-208ENST00000563220 LBHQ53QV2 105 aaPredicted RBP13.39□□□□□ -0.27
COMMD4-208ENST00000563220 PRR31Q5SQ13 230 aa13.39□□□□□ -0.27
COMMD4-208ENST00000563220 Q6AWC8 147 aa13.39□□□□□ -0.27
COMMD4-208ENST00000563220 LINC00482Q8N8I6 264 aa13.39□□□□□ -0.27
COMMD4-208ENST00000563220 NDUFAF3Q9BU61 184 aa13.39□□□□□ -0.27
COMMD4-208ENST00000563220 A0A1B0GUT8 65 aa13.38□□□□□ -0.27
COMMD4-208ENST00000563220 DUSP14O95147 198 aaKnown RBP13.38□□□□□ -0.27
COMMD4-208ENST00000563220 SCGB1D1O95968 90 aa13.38□□□□□ -0.27
COMMD4-208ENST00000563220 ODF3Q96PU9 254 aa13.38□□□□□ -0.27
COMMD4-208ENST00000563220 IGLV1-51P01701 117 aa13.38□□□□□ -0.27
COMMD4-208ENST00000563220 AMTNQ6UX39 209 aa13.38□□□□□ -0.27
COMMD4-208ENST00000563220 FER1L6-AS1Q8NA97 138 aa13.38□□□□□ -0.27
COMMD4-208ENST00000563220 SSBP4Q9BWG4 385 aaPredicted RBP13.38□□□□□ -0.27
COMMD4-208ENST00000563220 MUC21A0A0G2JKD1 596 aa13.37□□□□□ -0.27
COMMD4-208ENST00000563220 MUC21A0A140T8X8 626 aa13.37□□□□□ -0.27
COMMD4-208ENST00000563220 H3BMM0 161 aa13.37□□□□□ -0.27
COMMD4-208ENST00000563220 SLAQ13239 276 aa13.37□□□□□ -0.27
COMMD4-208ENST00000563220 KIAA1644Q3SXP7 199 aa13.37□□□□□ -0.27
COMMD4-208ENST00000563220 MUC21Q5SSG8 566 aa13.37□□□□□ -0.27
COMMD4-208ENST00000563220 Q6ZWC4 215 aa13.37□□□□□ -0.27
COMMD4-208ENST00000563220 AGRNO00468 2067 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 KIR2DL5BA0A0G2JN68 375 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 KIR2DL5BA0A0G2JPC4 375 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 M0R2Z0 102 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 HLA-DRB4P13762 266 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 LEPP41159 167 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 SSTP61278 116 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 ODF3L2Q3SX64 289 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 KIR2DL5AQ8N109 375 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 HLA-DRB4X5D2U9 266 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 TENM1Q9UKZ4 2725 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 APCSP02743 223 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 CTRLP40313 264 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 RIGQ13278 110 aa13.36□□□□□ -0.27
COMMD4-208ENST00000563220 TRAV12-2A0A075B6T6 113 aa13.35□□□□□ -0.27
COMMD4-208ENST00000563220 A8MTW9 85 aa13.35□□□□□ -0.27
COMMD4-208ENST00000563220 SPINK13Q1W4C9 94 aa13.35□□□□□ -0.27
COMMD4-208ENST00000563220 KRTAP24-1Q3LI83 254 aa13.35□□□□□ -0.27
COMMD4-208ENST00000563220 ANXA2RQ3ZCQ2 193 aa13.35□□□□□ -0.27
COMMD4-208ENST00000563220 SPATA3Q8NHX4 192 aa13.35□□□□□ -0.27
COMMD4-208ENST00000563220 RBMY1BA6NDE4 496 aaKnown RBP13.34□□□□□ -0.27
COMMD4-208ENST00000563220 RBMY1EA6NEQ0 496 aaKnown RBP13.34□□□□□ -0.27
COMMD4-208ENST00000563220 ZNF324O75467 553 aaPredicted RBP13.34□□□□□ -0.27
COMMD4-208ENST00000563220 RBMY1DP0C7P1 496 aaKnown RBP13.34□□□□□ -0.27
COMMD4-208ENST00000563220 CDKN1BP46527 198 aa13.34□□□□□ -0.27
COMMD4-208ENST00000563220 TEX43Q6ZNM6 134 aa13.34□□□□□ -0.27
COMMD4-208ENST00000563220 TRAV12-3A0A0B4J271 114 aa13.33□□□□□ -0.27
COMMD4-208ENST00000563220 C7orf71A4D174 169 aa13.33□□□□□ -0.27
COMMD4-208ENST00000563220 F2Z2F3 143 aa13.33□□□□□ -0.27
COMMD4-208ENST00000563220 BORCS7Q96B45 105 aa13.33□□□□□ -0.27
COMMD4-208ENST00000563220 KCNS1Q96KK3 526 aa13.33□□□□□ -0.27
COMMD4-208ENST00000563220 C2orf88Q9BSF0 95 aa13.33□□□□□ -0.27
COMMD4-208ENST00000563220 SAMD10Q9BYL1 202 aa13.33□□□□□ -0.27
COMMD4-208ENST00000563220 TSPOP30536 169 aa13.33□□□□□ -0.28
COMMD4-208ENST00000563220 FXYD7P58549 80 aa13.33□□□□□ -0.28
COMMD4-208ENST00000563220 ATRQ13535 2644 aa13.33□□□□□ -0.28
COMMD4-208ENST00000563220 NTF3P20783 257 aa13.32□□□□□ -0.28
COMMD4-208ENST00000563220 SRIP30626 198 aa13.32□□□□□ -0.28
COMMD4-208ENST00000563220 OR2K2Q8NGT1 345 aa13.32□□□□□ -0.28
COMMD4-208ENST00000563220 CNFNQ9BYD5 112 aa13.32□□□□□ -0.28
COMMD4-208ENST00000563220 A0A1B0GW15 77 aa13.31□□□□□ -0.28
COMMD4-208ENST00000563220 GNRH2O43555 120 aa13.31□□□□□ -0.28
COMMD4-208ENST00000563220 LINC00469Q8N7U9 141 aa13.31□□□□□ -0.28
COMMD4-208ENST00000563220 GATD1Q8NB37 220 aa13.31□□□□□ -0.28
COMMD4-208ENST00000563220 MSRB1Q9NZV6 116 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms