RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 NUDT10Q8NFP7 164 aa11.98□□□□□ -0.49
VPS4A-202ENST00000562754 OR11H2Q8NH07 326 aa11.98□□□□□ -0.49
VPS4A-202ENST00000562754 NUDT11Q96G61 164 aa11.98□□□□□ -0.49
VPS4A-202ENST00000562754 SPATA25Q9BR10 227 aa11.98□□□□□ -0.49
VPS4A-202ENST00000562754 TP53TG3Q9ULZ0 132 aa11.98□□□□□ -0.49
VPS4A-202ENST00000562754 KRBOX1C9JBD0 128 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 ORM1P02763 201 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 TYMSP04818 313 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 HTN1P15515 57 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 AZU1P20160 251 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 FAM159AQ6UWV7 190 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 FAM231DQ6ZW35 169 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 ZNF575Q86XF7 245 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 NEU1Q99519 415 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 FBN3Q75N90 2809 aa11.97□□□□□ -0.49
VPS4A-202ENST00000562754 TMSB15BA0A087X1C1 80 aa11.96□□□□□ -0.49
VPS4A-202ENST00000562754 B4DEV8 164 aa11.96□□□□□ -0.49
VPS4A-202ENST00000562754 P01737 135 aa11.96□□□□□ -0.49
VPS4A-202ENST00000562754 PNRC1Q12796 327 aaPredicted RBP11.96□□□□□ -0.49
VPS4A-202ENST00000562754 IBA57Q5T440 356 aaKnown RBP11.96□□□□□ -0.49
VPS4A-202ENST00000562754 DAZAP1Q96EP5 407 aaKnown RBP11.96□□□□□ -0.49
VPS4A-202ENST00000562754 CBY3A6NI87 242 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 GNRH2O43555 120 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 ERVFC1-1P60608 527 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 RRN3P1Q2M238 152 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 Q8NAQ8 132 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 OR2D3Q8NGH3 330 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 RNASE8Q8TDE3 154 aaKnown RBP11.95□□□□□ -0.5
VPS4A-202ENST00000562754 SFRP2Q96HF1 295 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 KCNS1Q96KK3 526 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 RPP21Q9H633 154 aaKnown RBP11.95□□□□□ -0.5
VPS4A-202ENST00000562754 OSTCQ9NRP0 149 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 DNAH9Q9NYC9 4486 aa11.95□□□□□ -0.5
VPS4A-202ENST00000562754 IGHV3-16A0A0C4DH30 117 aa11.94□□□□□ -0.5
VPS4A-202ENST00000562754 IGHV4-28A0A0C4DH34 117 aa11.94□□□□□ -0.5
VPS4A-202ENST00000562754 PLAC8L1A1L4L8 177 aa11.94□□□□□ -0.5
VPS4A-202ENST00000562754 GRIFINA4D1Z8 144 aa11.94□□□□□ -0.5
VPS4A-202ENST00000562754 TMEM189A5PLL7 270 aa11.94□□□□□ -0.5
VPS4A-202ENST00000562754 SMIM9A6NGZ8 99 aa11.94□□□□□ -0.5
VPS4A-202ENST00000562754 GATCO43716 136 aaKnown RBP11.94□□□□□ -0.5
VPS4A-202ENST00000562754 C11orf72Q8NBR9 251 aa11.94□□□□□ -0.5
VPS4A-202ENST00000562754 TRGV11A0A075B6L2 103 aa11.93□□□□□ -0.5
VPS4A-202ENST00000562754 GZMBP10144 247 aa11.93□□□□□ -0.5
VPS4A-202ENST00000562754 MIFP14174 115 aa11.93□□□□□ -0.5
VPS4A-202ENST00000562754 OR10G8Q8NGN5 311 aa11.93□□□□□ -0.5
VPS4A-202ENST00000562754 TMEM263Q8WUH6 116 aaKnown RBP11.93□□□□□ -0.5
VPS4A-202ENST00000562754 MDFICQ9P1T7 246 aa11.93□□□□□ -0.5
VPS4A-202ENST00000562754 V9GYV3 84 aa11.93□□□□□ -0.5
VPS4A-202ENST00000562754 HUWE1Q7Z6Z7 4374 aaKnown RBP11.93□□□□□ -0.5
VPS4A-202ENST00000562754 APOC3P02656 99 aa11.92□□□□□ -0.5
VPS4A-202ENST00000562754 CXCL1P09341 107 aa11.92□□□□□ -0.5
VPS4A-202ENST00000562754 RNF212Q495C1 297 aa11.92□□□□□ -0.5
VPS4A-202ENST00000562754 C15orf54Q8N8G6 183 aa11.92□□□□□ -0.5
VPS4A-202ENST00000562754 IL17DQ8TAD2 202 aa11.92□□□□□ -0.5
VPS4A-202ENST00000562754 C16orf74Q96GX8 76 aa11.92□□□□□ -0.5
VPS4A-202ENST00000562754 GSN-AS1Q9NRJ2 163 aa11.92□□□□□ -0.5
VPS4A-202ENST00000562754 DEFB4AO15263 64 aa11.91□□□□□ -0.5
VPS4A-202ENST00000562754 RNASE3P12724 160 aaKnown RBP11.91□□□□□ -0.5
VPS4A-202ENST00000562754 ASIPP42127 132 aa11.91□□□□□ -0.5
VPS4A-202ENST00000562754 ZNF415Q09FC8 603 aa11.91□□□□□ -0.5
VPS4A-202ENST00000562754 CT83Q5H943 113 aa11.91□□□□□ -0.5
VPS4A-202ENST00000562754 DNLZQ5SXM8 178 aa11.91□□□□□ -0.5
VPS4A-202ENST00000562754 ZNF493Q6ZR52 646 aa11.91□□□□□ -0.5
VPS4A-202ENST00000562754 CLRN3Q8NCR9 226 aa11.91□□□□□ -0.5
VPS4A-202ENST00000562754 ZMAT4Q9H898 229 aa11.91□□□□□ -0.5
VPS4A-202ENST00000562754 H3BVH4 76 aa11.9□□□□□ -0.5
VPS4A-202ENST00000562754 TCL1AP56279 114 aa11.9□□□□□ -0.5
VPS4A-202ENST00000562754 RPS20P60866 119 aaKnown RBP11.9□□□□□ -0.5
VPS4A-202ENST00000562754 C9orf85Q96MD7 179 aa11.9□□□□□ -0.5
VPS4A-202ENST00000562754 IGLC6P0CF74 106 aa11.89□□□□□ -0.51
VPS4A-202ENST00000562754 NHLRC4P0CG21 123 aaPredicted RBP11.89□□□□□ -0.51
VPS4A-202ENST00000562754 MUC4Q99102 2169 aa11.89□□□□□ -0.51
VPS4A-202ENST00000562754 MT-ND4LP03901 98 aa11.88□□□□□ -0.51
VPS4A-202ENST00000562754 S100A4P26447 101 aaKnown RBP11.88□□□□□ -0.51
VPS4A-202ENST00000562754 EMP1P54849 157 aa11.88□□□□□ -0.51
VPS4A-202ENST00000562754 SVBPQ8N300 66 aa11.88□□□□□ -0.51
VPS4A-202ENST00000562754 GTSF1Q8WW33 167 aa11.88□□□□□ -0.51
VPS4A-202ENST00000562754 C11orf68Q9H3H3 251 aaKnown RBP11.88□□□□□ -0.51
VPS4A-202ENST00000562754 TIMM8BQ9Y5J9 83 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-202ENST00000562754 XKRY2A2RUG3 117 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 C7orf77A4D0Y5 90 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 A8MWL6 223 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 PPP1R2P9O14990 202 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 ATP6V1G1O75348 118 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 ARMS2P0C7Q2 107 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 MED14OSP0DP75 135 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 RHEBQ15382 184 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 TSKUQ8WUA8 353 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 ANAPC16Q96DE5 110 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 SCRT2Q9NQ03 307 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 IL36BQ9NZH7 164 aa11.87□□□□□ -0.51
VPS4A-202ENST00000562754 A0A0J9YWU9 116 aa11.86□□□□□ -0.51
VPS4A-202ENST00000562754 SNURFLB1AK76 121 aa11.86□□□□□ -0.51
VPS4A-202ENST00000562754 SNAI2O43623 268 aa11.86□□□□□ -0.51
VPS4A-202ENST00000562754 SNAPINO95295 136 aa11.86□□□□□ -0.51
VPS4A-202ENST00000562754 DAZ2Q13117 558 aaKnown RBP11.86□□□□□ -0.51
VPS4A-202ENST00000562754 FER1L6-AS1Q8NA97 138 aa11.86□□□□□ -0.51
VPS4A-202ENST00000562754 SSBP4Q9BWG4 385 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-202ENST00000562754 NOP10Q9NPE3 64 aaKnown RBP11.86□□□□□ -0.51
VPS4A-202ENST00000562754 CELA1Q9UNI1 258 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms