RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 WT1-ASQ06250 92 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 C10orf55Q5SWW7 151 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 RPEQ96AT9 228 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 NDUFA4L2Q9NRX3 87 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 NDUFA3O95167 84 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 TCL1BO95988 128 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 MEIG1Q5JSS6 88 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 THAP8Q8NA92 274 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 OTORQ9NRC9 128 aa10.34□□□□□ -0.75
CLK3-206ENST00000562078 A8MWV9 139 aa10.33□□□□□ -0.76
CLK3-206ENST00000562078 IGHV1-8P0DP01 117 aa10.33□□□□□ -0.76
CLK3-206ENST00000562078 PRB3Q04118 309 aaPredicted RBP10.33□□□□□ -0.76
CLK3-206ENST00000562078 C8orf49Q96NF6 230 aa10.33□□□□□ -0.76
CLK3-206ENST00000562078 IGHV3-21A0A0B4J1V1 117 aa10.33□□□□□ -0.76
CLK3-206ENST00000562078 MYMXA0A1B0GTQ4 84 aa10.33□□□□□ -0.76
CLK3-206ENST00000562078 NCBP2LA6PVI3 153 aaKnown RBP10.33□□□□□ -0.76
CLK3-206ENST00000562078 HOXB4P17483 251 aaPredicted RBP10.33□□□□□ -0.76
CLK3-206ENST00000562078 UBE2D3P61077 147 aa10.33□□□□□ -0.76
CLK3-206ENST00000562078 UBE2D2P62837 147 aa10.33□□□□□ -0.76
CLK3-206ENST00000562078 CITED2Q99967 270 aaPredicted RBP10.33□□□□□ -0.76
CLK3-206ENST00000562078 CSMD1Q96PZ7 3565 aa10.33□□□□□ -0.76
CLK3-206ENST00000562078 LY6HO94772 140 aa10.32□□□□□ -0.76
CLK3-206ENST00000562078 PPP1R27Q86WC6 154 aa10.32□□□□□ -0.76
CLK3-206ENST00000562078 LINC00311Q8N616 119 aa10.32□□□□□ -0.76
CLK3-206ENST00000562078 TRAV8-2A0A0B4J237 113 aa10.32□□□□□ -0.76
CLK3-206ENST00000562078 ATP5LO75964 103 aa10.31□□□□□ -0.76
CLK3-206ENST00000562078 C8orf31Q8N9H6 132 aa10.31□□□□□ -0.76
CLK3-206ENST00000562078 OR4C13Q8NGP0 309 aa10.31□□□□□ -0.76
CLK3-206ENST00000562078 C17orf77Q96MU5 243 aa10.31□□□□□ -0.76
CLK3-206ENST00000562078 CGB1A6NKQ9 187 aa10.31□□□□□ -0.76
CLK3-206ENST00000562078 WNK2Q9Y3S1 2297 aa10.31□□□□□ -0.76
CLK3-206ENST00000562078 GATA1P15976 413 aaPredicted RBP10.3□□□□□ -0.76
CLK3-206ENST00000562078 SBSPONQ8IVN8 264 aa10.3□□□□□ -0.76
CLK3-206ENST00000562078 RASL11BQ9BPW5 248 aa10.3□□□□□ -0.76
CLK3-206ENST00000562078 MSRB1Q9NZV6 116 aa10.3□□□□□ -0.76
CLK3-206ENST00000562078 IGHV3-72A0A0B4J1Y9 119 aa10.3□□□□□ -0.76
CLK3-206ENST00000562078 TRGV9Q99603 122 aa10.3□□□□□ -0.76
CLK3-206ENST00000562078 UBTD1Q9HAC8 227 aa10.3□□□□□ -0.76
CLK3-206ENST00000562078 USP9XQ93008 2570 aaPredicted RBP10.3□□□□□ -0.76
CLK3-206ENST00000562078 AKAP6Q13023 2319 aa10.29□□□□□ -0.76
CLK3-206ENST00000562078 LGALS1P09382 135 aaKnown RBP10.29□□□□□ -0.76
CLK3-206ENST00000562078 RNF185Q96GF1 192 aa10.29□□□□□ -0.76
CLK3-206ENST00000562078 TPSG1Q9NRR2 321 aa10.29□□□□□ -0.76
CLK3-206ENST00000562078 DOPEY1Q5JWR5 2465 aa10.29□□□□□ -0.76
CLK3-206ENST00000562078 UBE2D1P51668 147 aa10.29□□□□□ -0.76
CLK3-206ENST00000562078 TMEM75Q8N9X5 138 aa10.29□□□□□ -0.76
CLK3-206ENST00000562078 RASL10AQ92737 203 aa10.29□□□□□ -0.76
CLK3-206ENST00000562078 COL12A1Q99715 3063 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 LINC01546A6NGU7 62 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 ENSAO43768 121 aaKnown RBP10.28□□□□□ -0.76
CLK3-206ENST00000562078 IGLV2-23P01705 113 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 HCP5Q6MZN7 132 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 TMEM167AQ8TBQ9 72 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 UBR5O95071 2799 aaPredicted RBP10.28□□□□□ -0.76
CLK3-206ENST00000562078 TRAV25A0A0B4J276 109 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 TRBV6-1A0A0K0K1D8 114 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 A0A1W2PPR1 153 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 TNFRSF6BO95407 300 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 COX7A1P24310 79 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 LYZP61626 148 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 C5orf47Q569G3 176 aa10.28□□□□□ -0.76
CLK3-206ENST00000562078 ASH1LQ9NR48 2969 aaKnown RBP10.28□□□□□ -0.76
CLK3-206ENST00000562078 UTP20O75691 2785 aaKnown RBP10.27□□□□□ -0.76
CLK3-206ENST00000562078 LINC01619G3V211 115 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 M0R3E3 92 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 APELAP0DMC3 54 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 ASIPP42127 132 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 SLC25A39Q9BZJ4 359 aaPredicted RBP10.27□□□□□ -0.77
CLK3-206ENST00000562078 CSDC2Q9Y534 153 aaKnown RBP10.27□□□□□ -0.77
CLK3-206ENST00000562078 KMT2BQ9UMN6 2715 aaPredicted RBP10.27□□□□□ -0.77
CLK3-206ENST00000562078 SPTAN1Q13813 2472 aaKnown RBP10.27□□□□□ -0.77
CLK3-206ENST00000562078 SH2D1AO60880 128 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 IGLV1-47P01700 117 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 TMEM78Q5T7P6 136 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 C11orf71Q6IPW1 123 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 OR11H6Q8NGC7 330 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 NXT2Q9NPJ8 142 aaKnown RBP10.27□□□□□ -0.77
CLK3-206ENST00000562078 HIGD1AQ9Y241 93 aa10.27□□□□□ -0.77
CLK3-206ENST00000562078 CRIP2P52943 208 aaPredicted RBP10.26□□□□□ -0.77
CLK3-206ENST00000562078 SUB1P53999 127 aaKnown RBP eCLIP10.26□□□□□ -0.77
CLK3-206ENST00000562078 VMA21Q3ZAQ7 101 aa10.26□□□□□ -0.77
CLK3-206ENST00000562078 PLEKHB2Q96CS7 222 aa10.26□□□□□ -0.77
CLK3-206ENST00000562078 AAMDCQ9H7C9 122 aa10.26□□□□□ -0.77
CLK3-206ENST00000562078 ONECUT1Q9UBC0 465 aa10.26□□□□□ -0.77
CLK3-206ENST00000562078 SCGB1C2P0DMR2 95 aa10.26□□□□□ -0.77
CLK3-206ENST00000562078 EFNA4P52798 201 aa10.26□□□□□ -0.77
CLK3-206ENST00000562078 SRSF9Q13242 221 aaKnown RBP eCLIP10.26□□□□□ -0.77
CLK3-206ENST00000562078 CHD6Q8TD26 2715 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 MED13LQ71F56 2210 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 CNTFRP26992 372 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 Q6Q795 121 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 DTX2Q86UW9 622 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 ODF3Q96PU9 254 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 BUB1B-PAK6H3BSN5 160 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 SLC25A20O43772 301 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 CD7P09564 240 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 PLNP26678 52 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 LYRM7Q5U5X0 104 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 NDUFA11Q86Y39 141 aa10.25□□□□□ -0.77
CLK3-206ENST00000562078 MYOZ3Q8TDC0 251 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms