RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PRTFDC1Q9NRG1 225 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF492Q9P255 531 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 TP73-AS1Q9UF72 201 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 COL4A5P29400 1685 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 TET2Q6N021 2002 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-208ENST00000559119 FANCMQ8IYD8 2048 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 HEATR5BQ9P2D3 2071 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 TMEM131Q92545 1883 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 TRAV5A0A0B4J249 113 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 TRBV6-1A0A0K0K1D8 114 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 C5orf49A4QMS7 147 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 C19orf71A6NCJ1 209 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 HIGD1CA8MV81 97 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 H0YGG7 62 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 J3KT08 172 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 M0R135 149 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 M0R2P5 195 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 SPINK4O60575 86 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 SNCGO76070 127 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 RBP4P02753 201 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 STATHP02808 62 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 MGST1P10620 155 aaKnown RBP1.84□□□□□ -2.11
VPS13C-208ENST00000559119 CRYGSP22914 178 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 SSR4P51571 173 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 SUB1P53999 127 aaKnown RBP eCLIP1.84□□□□□ -2.11
VPS13C-208ENST00000559119 FXYD2P54710 66 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 DLX1P56177 255 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 DSCR4P56555 118 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-208ENST00000559119 EDDM3BP56851 147 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 UBE2D3P61077 147 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 FGF12P61328 243 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 UBE2D2P62837 147 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 HES1Q14469 280 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 FXYD3Q14802 87 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 CCL15Q16663 113 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 TBC1D28Q2M2D7 210 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 RSPO1Q2MKA7 263 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-208ENST00000559119 ALKBH6Q3KRA9 238 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 PIGYQ3MUY2 71 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 SPRNQ5BIV9 151 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 MEIG1Q5JSS6 88 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 AMTNQ6UX39 209 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF493Q6ZR52 646 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 SPTSSAQ969W0 71 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 MGST2Q99735 147 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 NAA38Q9BRA0 125 aaKnown RBP1.84□□□□□ -2.11
VPS13C-208ENST00000559119 CHAC1Q9BUX1 264 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 IMUPQ9GZP8 106 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 FBXL15Q9H469 300 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 RPP21Q9H633 154 aaKnown RBP1.84□□□□□ -2.11
VPS13C-208ENST00000559119 HRASLS2Q9NWW9 162 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 KLF12Q9Y4X4 402 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 HILPDAQ9Y5L2 63 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 SLC25A15Q9Y619 301 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 U3KQK5 164 aa1.84□□□□□ -2.11
VPS13C-208ENST00000559119 TRPM6Q9BX84 2022 aa1.84□□□□□ -2.12
VPS13C-208ENST00000559119 SCN3AQ9NY46 2000 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 TRBV7-3A0A075B6L6 115 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 TRBV25-1A0A075B6N4 114 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 IGLV3-32A0A0A0MS00 114 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 TRBV7-7A0A0K0K1E9 115 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 MYMXA0A1B0GTQ4 84 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 FAM240AA0A1B0GVK7 77 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 LYRM9A8MSI8 78 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 A8MWV9 139 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 C9JAW5 83 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 NCR2O95944 276 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 NPYP01303 97 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 HBDP02042 147 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 ORM1P02763 201 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 IL4P05112 153 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 CRYGDP07320 174 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 SCGB1C2P0DMR2 95 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 CYBAP13498 195 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 ORM2P19652 201 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 MYCNOSP40205 109 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 CXCL5P42830 114 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 EDDM3AQ14507 147 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 PMVKQ15126 192 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 FAM27BQ5VT28 67 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 TEX36Q5VZQ5 186 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 MIC13Q5XKP0 118 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 MORN3Q6PF18 240 aaPredicted RBP1.83□□□□□ -2.12
VPS13C-208ENST00000559119 PDPNQ86YL7 162 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 DRAM1Q8N682 238 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 BAALCQ8WXS3 180 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 IFI27L1Q96BM0 104 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 LINC00526Q96FQ7 95 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 ZNF488Q96MN9 340 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 HSD17B10Q99714 261 aaKnown RBP1.83□□□□□ -2.12
VPS13C-208ENST00000559119 ZNF355PQ9NSJ1 428 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 NHP2Q9NX24 153 aaKnown RBP1.83□□□□□ -2.12
VPS13C-208ENST00000559119 HHLA3Q9XRX5 114 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 HIGD1AQ9Y241 93 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 AMMECR1Q9Y4X0 333 aaPredicted RBP1.83□□□□□ -2.12
VPS13C-208ENST00000559119 KMT2EQ8IZD2 1858 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 DOCK3Q8IZD9 2030 aa1.83□□□□□ -2.12
VPS13C-208ENST00000559119 KIAA1549LQ6ZVL6 1849 aa1.82□□□□□ -2.12
VPS13C-208ENST00000559119 OBSL1O75147 1896 aa1.82□□□□□ -2.12
VPS13C-208ENST00000559119 TRAV4A0A0B4J268 109 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms