RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CFHR3Q02985 330 aa8.06□□□□□ -1.12
CUX1-217ENST00000558836 ORMDL3Q8N138 153 aa8.06□□□□□ -1.12
CUX1-217ENST00000558836 PSMG3-AS1Q96PY0 264 aa8.06□□□□□ -1.12
CUX1-217ENST00000558836 PEF1Q9UBV8 284 aaKnown RBP8.06□□□□□ -1.12
CUX1-217ENST00000558836 A0A0G2JLM5 398 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 A0A1B0GW15 77 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 hDV102S1A0JD36 115 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 RBAKDNA6NC62 111 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 SYS1-DBNDD2H3BUS1 97 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 HOXA3O43365 443 aaPredicted RBP8.05□□□□□ -1.12
CUX1-217ENST00000558836 IGHV4-31P0DP07 118 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 IGLL1P15814 213 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 Q96MF0 132 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 OR4C46A6NHA9 309 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 FBLL1A6NHQ2 334 aaKnown RBP8.05□□□□□ -1.12
CUX1-217ENST00000558836 TCTAP57738 103 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 LINC01559Q495D7 138 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 C9orf47Q6ZRZ4 202 aa8.05□□□□□ -1.12
CUX1-217ENST00000558836 TRAV26-2A0A0B4J265 109 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 IGHV7-4-1A0A0J9YVY3 117 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 PSMB8P28062 276 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 RPS20P60866 119 aaKnown RBP8.04□□□□□ -1.12
CUX1-217ENST00000558836 Q6ZN92 141 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 C9orf139Q6ZV77 190 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 DAZ1Q9NQZ3 744 aaKnown RBP8.04□□□□□ -1.12
CUX1-217ENST00000558836 H3BVH4 76 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 SOCS3O14543 225 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 OR5AL1P0C617 328 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 IGLC3P0DOY3 106 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 GATD1Q8NB37 220 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 OR8A1Q8NGG7 326 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 RNF185Q96GF1 192 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 UFC1Q9Y3C8 167 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 A0A096LNJ9 63 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 H3BUA1 57 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 RNASE4P34096 147 aaKnown RBP8.04□□□□□ -1.12
CUX1-217ENST00000558836 DEFB113Q30KQ7 82 aa8.04□□□□□ -1.12
CUX1-217ENST00000558836 TCF21O43680 179 aa8.03□□□□□ -1.12
CUX1-217ENST00000558836 IGKV3-20P01619 116 aa8.03□□□□□ -1.12
CUX1-217ENST00000558836 OR10J6PQ8NGY7 276 aa8.03□□□□□ -1.12
CUX1-217ENST00000558836 MAP1LC3CQ9BXW4 147 aa8.03□□□□□ -1.12
CUX1-217ENST00000558836 HECTD1Q9ULT8 2610 aa8.03□□□□□ -1.12
CUX1-217ENST00000558836 TRAV9-2A0A087WT02 112 aa8.03□□□□□ -1.12
CUX1-217ENST00000558836 TMEM191AQ9H0A3 160 aa8.03□□□□□ -1.12
CUX1-217ENST00000558836 SMPXQ9UHP9 88 aa8.03□□□□□ -1.12
CUX1-217ENST00000558836 SYNJ2BPP57105 145 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 DEFB136Q30KP8 78 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 C18orf65Q6ZTR6 163 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 ZFAND2AQ8N6M9 145 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 ATP6V0BQ99437 205 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 M0R381 172 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 GAGE1Q13065 139 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 SPANXN1Q5VSR9 72 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 SHISA2Q6UWI4 295 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 VPREB3Q9UKI3 123 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 U3KQK5 164 aa8.02□□□□□ -1.13
CUX1-217ENST00000558836 GNRH2O43555 120 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 RNASE8Q8TDE3 154 aaKnown RBP8.01□□□□□ -1.13
CUX1-217ENST00000558836 MRPL53Q96EL3 112 aaKnown RBP8.01□□□□□ -1.13
CUX1-217ENST00000558836 C18orf15Q96N68 181 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 DUX3Q96PT4 197 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 ZNF747Q9BV97 191 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 FASNP49327 2511 aaKnown RBP8.01□□□□□ -1.13
CUX1-217ENST00000558836 ZNF688P0C7X2 276 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 CDKN1BP46527 198 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 UQCR10Q9UDW1 63 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 CRXO43186 299 aaPredicted RBP8.01□□□□□ -1.13
CUX1-217ENST00000558836 HNRNPA3P51991 378 aaKnown RBP8.01□□□□□ -1.13
CUX1-217ENST00000558836 Q6YL49 198 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 WFDC11Q8NEX6 87 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 CNFNQ9BYD5 112 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 HSPB8Q9UJY1 196 aa8.01□□□□□ -1.13
CUX1-217ENST00000558836 PDZD2O15018 2839 aa8□□□□□ -1.13
CUX1-217ENST00000558836 J3QLI3 93 aa8□□□□□ -1.13
CUX1-217ENST00000558836 BRI3O95415 125 aa8□□□□□ -1.13
CUX1-217ENST00000558836 IGHV4OR15-8A0A075B7B6 117 aa8□□□□□ -1.13
CUX1-217ENST00000558836 A0A087WW49 117 aa8□□□□□ -1.13
CUX1-217ENST00000558836 SNAI2O43623 268 aa8□□□□□ -1.13
CUX1-217ENST00000558836 TNFRSF6BO95407 300 aa8□□□□□ -1.13
CUX1-217ENST00000558836 S100A4P26447 101 aaKnown RBP8□□□□□ -1.13
CUX1-217ENST00000558836 ANXA2RQ3ZCQ2 193 aa8□□□□□ -1.13
CUX1-217ENST00000558836 DEFB104AQ8WTQ1 72 aa8□□□□□ -1.13
CUX1-217ENST00000558836 LINC00477Q96M19 166 aa8□□□□□ -1.13
CUX1-217ENST00000558836 ZNF702PQ9H963 129 aa8□□□□□ -1.13
CUX1-217ENST00000558836 MUC4Q99102 2169 aa8□□□□□ -1.13
CUX1-217ENST00000558836 JMJD1CQ15652 2540 aa8□□□□□ -1.13
CUX1-217ENST00000558836 UNC79Q9P2D8 2635 aa8□□□□□ -1.13
CUX1-217ENST00000558836 OVOL1O14753 267 aa7.99□□□□□ -1.13
CUX1-217ENST00000558836 SRSF2Q01130 221 aaKnown RBP7.99□□□□□ -1.13
CUX1-217ENST00000558836 PSMG4Q5JS54 123 aa7.99□□□□□ -1.13
CUX1-217ENST00000558836 KLHDC1Q8N7A1 406 aa7.99□□□□□ -1.13
CUX1-217ENST00000558836 GCN1Q92616 2671 aaKnown RBP7.99□□□□□ -1.13
CUX1-217ENST00000558836 TRAV12-2A0A075B6T6 113 aa7.99□□□□□ -1.13
CUX1-217ENST00000558836 HINT1P49773 126 aaPredicted RBP7.99□□□□□ -1.13
CUX1-217ENST00000558836 SMIM15Q7Z3B0 74 aa7.99□□□□□ -1.13
CUX1-217ENST00000558836 DCANP1Q8TF63 244 aa7.99□□□□□ -1.13
CUX1-217ENST00000558836 MS4A6AQ9H2W1 248 aa7.99□□□□□ -1.13
CUX1-217ENST00000558836 TSPOP30536 169 aa7.98□□□□□ -1.13
CUX1-217ENST00000558836 C20orf202A1L168 122 aa7.98□□□□□ -1.13
CUX1-217ENST00000558836 KHDC1LQ5JSQ8 128 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms