RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 DYNAPQ8N1N2 210 aa5.95□□□□□ -1.46
LIMA1-216ENST00000552909 ATP6V0E2Q8NHE4 81 aa5.95□□□□□ -1.46
LIMA1-216ENST00000552909 SRSF12Q8WXF0 261 aaKnown RBP5.95□□□□□ -1.46
LIMA1-216ENST00000552909 RNF183Q96D59 192 aa5.95□□□□□ -1.46
LIMA1-216ENST00000552909 PRO0461Q9UI25 63 aa5.95□□□□□ -1.46
LIMA1-216ENST00000552909 TRBV25-1A0A075B6N4 114 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 IGKV2D-26A0A0A0MRZ7 120 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 MT-ATP8P03928 68 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 ERHP84090 104 aaKnown RBP5.94□□□□□ -1.46
LIMA1-216ENST00000552909 DIAPH2-AS1Q14236 149 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 C8orf31Q8N9H6 132 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 SPATA3Q8NHX4 192 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 PRELID3AQ96N28 172 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 C1QTNF4Q9BXJ3 329 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 CDIP1Q9H305 208 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 Q9H3A6 140 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 NBEAL1Q6ZS30 2694 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 NPIPB5A8MRT5 1133 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 RBP4P02753 201 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 RNASE1P07998 156 aaKnown RBP5.94□□□□□ -1.46
LIMA1-216ENST00000552909 ORM2P19652 201 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 FXYD7P58549 80 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 GAGE5Q13069 117 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 GAGE6Q13070 117 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 C12orf74Q32Q52 190 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 Q6AWC8 147 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 LCNL1Q6ZST4 164 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 PRNTQ86SH4 94 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 ORMDL3Q8N138 153 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 LINC00311Q8N616 119 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 NPIPB3Q92617 1050 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 FLYWCH2Q96CP2 140 aaKnown RBP5.94□□□□□ -1.46
LIMA1-216ENST00000552909 ANAPC13Q9BS18 74 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 U3KQK5 164 aa5.94□□□□□ -1.46
LIMA1-216ENST00000552909 ODF3BA8MYP8 253 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 TAL2Q16559 108 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 RRN3P1Q2M238 152 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 ZNF493Q6ZR52 646 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 ZNF833PQ6ZTB9 187 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 Q6ZUT4 128 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 OR11H6Q8NGC7 330 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 TPPP3Q9BW30 176 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 TTTY13Q9BZ97 58 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 IGKV1D-37A0A075B6S9 117 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 TRAV8-1A0A0A6YYK1 113 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 WI2-2373I1.2A0A1W2PRP0 233 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 BUB1B-PAK6H3BSN5 160 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 K7EMI3 77 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 IGLV1-47P01700 117 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 HLA-DRB4P13762 266 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 XGP55808 180 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 WFDC3Q8IUB2 231 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 THAP8Q8NA92 274 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 MRPL20Q9BYC9 149 aaKnown RBP5.93□□□□□ -1.46
LIMA1-216ENST00000552909 HLA-DRB4X5D2U9 266 aa5.93□□□□□ -1.46
LIMA1-216ENST00000552909 TMEM89A2RUT3 159 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 H3BTX0 84 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 IGKCP01834 107 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 IGKV1-16P04430 117 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 SAA1P0DJI8 122 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-216ENST00000552909 GP9P14770 177 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 EVI2AP22794 236 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 FAM104BQ5XKR9 115 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 SHISA2Q6UWI4 295 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 ZNF562Q6V9R5 426 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 OSR1Q8TAX0 266 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-216ENST00000552909 ZMAT4Q9H898 229 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 OTORQ9NRC9 128 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 NDUFA4L2Q9NRX3 87 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 HHLA3Q9XRX5 114 aa5.92□□□□□ -1.46
LIMA1-216ENST00000552909 H3BUX3 64 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 IGLV2-11P01706 119 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 IGHV3-48P01763 117 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 PPIFP30405 207 aaKnown RBP5.91□□□□□ -1.46
LIMA1-216ENST00000552909 SUB1P53999 127 aaKnown RBP eCLIP5.91□□□□□ -1.46
LIMA1-216ENST00000552909 ODF1Q14990 250 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 LY6EQ16553 131 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 GOLT1AQ6ZVE7 132 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 GTSCR1Q86UQ5 136 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 AMN1Q8IY45 258 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 RITA1Q96K30 269 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 CMYA5Q8N3K9 4069 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 IGHV3-72A0A0B4J1Y9 119 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 TRBV6-1A0A0K0K1D8 114 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 INS-IGF2F8WCM5 200 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 LY6LH3BQJ8 138 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 CRYGCP07315 174 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 CFAP126Q5VTH2 177 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 TMEM86BQ8N661 226 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 RPEQ96AT9 228 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 HIST1H4GQ99525 98 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 FAM110AQ9BQ89 295 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 VCX2Q9H322 139 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 MGAM2Q2M2H8 2515 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 WNK1Q9H4A3 2382 aa5.91□□□□□ -1.46
LIMA1-216ENST00000552909 TRBV7-9A0A0J9YWB2 115 aa5.9□□□□□ -1.46
LIMA1-216ENST00000552909 B5MCH6 92 aa5.9□□□□□ -1.46
LIMA1-216ENST00000552909 DPM2O94777 84 aa5.9□□□□□ -1.46
LIMA1-216ENST00000552909 PRSS1P07477 247 aa5.9□□□□□ -1.46
LIMA1-216ENST00000552909 CKS2P33552 79 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 149.4 ms