RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 HLA-DRB4X5D2U9 266 aa11.37□□□□□ -0.59
HOXC11-202ENST00000546378 FABP5P3A8MUU1 101 aa11.37□□□□□ -0.59
HOXC11-202ENST00000546378 CT83Q5H943 113 aa11.37□□□□□ -0.59
HOXC11-202ENST00000546378 BRD3OSQ6XYD6 125 aa11.36□□□□□ -0.59
HOXC11-202ENST00000546378 A0A087WWL8 130 aa11.36□□□□□ -0.59
HOXC11-202ENST00000546378 DPM2O94777 84 aa11.36□□□□□ -0.59
HOXC11-202ENST00000546378 SCGB3A1Q96QR1 104 aa11.36□□□□□ -0.59
HOXC11-202ENST00000546378 IGLV1-47P01700 117 aa11.35□□□□□ -0.59
HOXC11-202ENST00000546378 PPBPP02775 128 aa11.35□□□□□ -0.59
HOXC11-202ENST00000546378 BMI1P35226 326 aa11.35□□□□□ -0.59
HOXC11-202ENST00000546378 C5orf64Q2M2E5 130 aa11.35□□□□□ -0.59
HOXC11-202ENST00000546378 C11orf21Q9P2W6 132 aa11.35□□□□□ -0.59
HOXC11-202ENST00000546378 RNASE4P34096 147 aaKnown RBP11.35□□□□□ -0.59
HOXC11-202ENST00000546378 ZNF256Q9Y2P7 627 aaPredicted RBP11.35□□□□□ -0.59
HOXC11-202ENST00000546378 HIST2H2BDQ6DRA6 164 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 FANCD2OSQ96PS1 177 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 PGPEP1Q9NXJ5 209 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 G3V4G9 280 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 OR11H12B2RN74 326 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 ODF1Q14990 250 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 LGALS9BQ3B8N2 356 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 TMEM170BQ5T4T1 132 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 LGALS9CQ6DKI2 356 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 ZNF562Q6V9R5 426 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 OR11H1Q8NG94 326 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 OR11H2Q8NH07 326 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 RAX2Q96IS3 184 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 C20orf78Q9BR46 151 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 JPT2Q9H910 190 aa11.34□□□□□ -0.59
HOXC11-202ENST00000546378 DLX6P56179 175 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 TTC9CQ8N5M4 171 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 AGPAT4-IT1Q9H0P7 198 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 B9A039 149 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 VMO1Q7Z5L0 202 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 OR4X2Q8NGF9 303 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 CLUHP3Q96NS8 147 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 PHLDA3Q9Y5J5 127 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 ADARB2-AS1A8MUL3 147 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 Q1RN00 199 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 TIMD4Q96H15 378 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 SMAD5-AS1Q9Y6J3 95 aa11.33□□□□□ -0.6
HOXC11-202ENST00000546378 IGHV3-73A0A0B4J1V6 119 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 C19orf84I3L1E1 186 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 ATP6V0E1O15342 81 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 CTSGP08311 255 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 PVRIGQ6DKI7 326 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 LINC01549A6NIU2 74 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 ZNF815PA8K554 130 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 GNRH2O43555 120 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 OR9G4Q8NGQ1 327 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 DOPEY1Q5JWR5 2465 aa11.32□□□□□ -0.6
HOXC11-202ENST00000546378 WI2-2373I1.2A0A1W2PRP0 233 aa11.31□□□□□ -0.6
HOXC11-202ENST00000546378 SIGMAR1Q99720 223 aa11.31□□□□□ -0.6
HOXC11-202ENST00000546378 IGKV3D-20A0A0C4DH25 116 aa11.31□□□□□ -0.6
HOXC11-202ENST00000546378 A0A0U1RRA0 63 aa11.31□□□□□ -0.6
HOXC11-202ENST00000546378 SLC25A16P16260 332 aa11.31□□□□□ -0.6
HOXC11-202ENST00000546378 RNASE13Q5GAN3 156 aaKnown RBP11.31□□□□□ -0.6
HOXC11-202ENST00000546378 ZFP2Q6ZN57 461 aa11.31□□□□□ -0.6
HOXC11-202ENST00000546378 FBN2P35556 2912 aa11.3□□□□□ -0.6
HOXC11-202ENST00000546378 CEACAM3P40198 252 aa11.3□□□□□ -0.6
HOXC11-202ENST00000546378 GAGE13Q4V321 117 aa11.3□□□□□ -0.6
HOXC11-202ENST00000546378 GAGE12HA6NDE8 117 aa11.3□□□□□ -0.6
HOXC11-202ENST00000546378 PRTN3P24158 256 aa11.3□□□□□ -0.6
HOXC11-202ENST00000546378 RNF185Q96GF1 192 aa11.3□□□□□ -0.6
HOXC11-202ENST00000546378 OPRPNQ99935 248 aaPredicted RBP11.3□□□□□ -0.6
HOXC11-202ENST00000546378 C12orf74Q32Q52 190 aa11.29□□□□□ -0.6
HOXC11-202ENST00000546378 TRBV12-3P01733 135 aa11.29□□□□□ -0.6
HOXC11-202ENST00000546378 UFSP1Q6NVU6 142 aa11.29□□□□□ -0.6
HOXC11-202ENST00000546378 CEND1Q8N111 149 aa11.29□□□□□ -0.6
HOXC11-202ENST00000546378 ITLN2Q8WWU7 325 aaPredicted RBP11.29□□□□□ -0.6
HOXC11-202ENST00000546378 PRRC2AP48634 2157 aaKnown RBP11.29□□□□□ -0.6
HOXC11-202ENST00000546378 ACANP16112 2415 aa11.29□□□□□ -0.6
HOXC11-202ENST00000546378 LAGE3Q14657 143 aa11.29□□□□□ -0.6
HOXC11-202ENST00000546378 TMEM14CQ9P0S9 112 aa11.29□□□□□ -0.6
HOXC11-202ENST00000546378 A0A1W2PPR1 153 aa11.28□□□□□ -0.6
HOXC11-202ENST00000546378 IGLL5B9A064 214 aa11.28□□□□□ -0.6
HOXC11-202ENST00000546378 RPL39P62891 51 aaKnown RBP11.28□□□□□ -0.6
HOXC11-202ENST00000546378 DUX5Q96PT3 197 aa11.28□□□□□ -0.6
HOXC11-202ENST00000546378 SPAG8Q99932 426 aaPredicted RBP11.28□□□□□ -0.6
HOXC11-202ENST00000546378 LINC00574Q9H8X3 128 aa11.28□□□□□ -0.6
HOXC11-202ENST00000546378 PRSS2P07478 247 aa11.28□□□□□ -0.6
HOXC11-202ENST00000546378 Q6AWC8 147 aa11.28□□□□□ -0.6
HOXC11-202ENST00000546378 SYT8Q8NBV8 401 aa11.28□□□□□ -0.6
HOXC11-202ENST00000546378 CHTOPQ9Y3Y2 248 aaKnown RBP11.28□□□□□ -0.6
HOXC11-202ENST00000546378 CHD6Q8TD26 2715 aa11.28□□□□□ -0.6
HOXC11-202ENST00000546378 LINC00311Q8N616 119 aa11.27□□□□□ -0.6
HOXC11-202ENST00000546378 PLEKHB2Q96CS7 222 aa11.27□□□□□ -0.6
HOXC11-202ENST00000546378 BBC3Q96PG8 261 aaPredicted RBP11.27□□□□□ -0.6
HOXC11-202ENST00000546378 RAB1BQ9H0U4 201 aa11.27□□□□□ -0.6
HOXC11-202ENST00000546378 HIVEP2P31629 2446 aa11.27□□□□□ -0.6
HOXC11-202ENST00000546378 TRAV12-2A0A075B6T6 113 aa11.27□□□□□ -0.61
HOXC11-202ENST00000546378 CRYGBP07316 175 aa11.27□□□□□ -0.61
HOXC11-202ENST00000546378 PF4V1P10720 104 aa11.27□□□□□ -0.61
HOXC11-202ENST00000546378 ZFP36P26651 326 aaKnown RBP11.27□□□□□ -0.61
HOXC11-202ENST00000546378 NCOR1P1Q9H4R4 102 aa11.27□□□□□ -0.61
HOXC11-202ENST00000546378 HHLA3Q9XRX5 114 aa11.27□□□□□ -0.61
HOXC11-202ENST00000546378 PRR9Q5T870 116 aa11.27□□□□□ -0.61
HOXC11-202ENST00000546378 NF1P21359 2839 aa11.26□□□□□ -0.61
HOXC11-202ENST00000546378 HOXB4P17483 251 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms