RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ANK3Q12955 4377 aaKnown RBP10.83□□□□□ -0.68
VPS33A-209ENST00000544349 FBLL1A6NHQ2 334 aaKnown RBP10.83□□□□□ -0.68
VPS33A-209ENST00000544349 STPG4Q8N801 248 aa10.83□□□□□ -0.68
VPS33A-209ENST00000544349 MRPL53Q96EL3 112 aaKnown RBP10.83□□□□□ -0.68
VPS33A-209ENST00000544349 C16orf92Q96LL3 132 aa10.83□□□□□ -0.68
VPS33A-209ENST00000544349 A0A096LNJ9 63 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 SMKR1H3BMG3 65 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 LGALS9O00182 355 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 IGLC6P0CF74 106 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 HOXD3P31249 432 aaPredicted RBP10.82□□□□□ -0.68
VPS33A-209ENST00000544349 FAM104BQ5XKR9 115 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 PMCHL2Q9BQD1 86 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 RBAKDNA6NC62 111 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 IFI27P40305 119 aaPredicted RBP10.82□□□□□ -0.68
VPS33A-209ENST00000544349 SYNJ2BPP57105 145 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 MRPL51Q4U2R6 128 aaKnown RBP10.82□□□□□ -0.68
VPS33A-209ENST00000544349 FER1L6-AS1Q8NA97 138 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 C16orf95Q9H693 158 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 AP5S1Q9NUS5 200 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 LAMTOR2Q9Y2Q5 125 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 U3KQK5 164 aa10.82□□□□□ -0.68
VPS33A-209ENST00000544349 LOC389332A0A1B0GUA5 103 aa10.81□□□□□ -0.68
VPS33A-209ENST00000544349 SOCS3O14543 225 aa10.81□□□□□ -0.68
VPS33A-209ENST00000544349 NCR2O95944 276 aa10.81□□□□□ -0.68
VPS33A-209ENST00000544349 C4orf3Q8WVX3 66 aa10.81□□□□□ -0.68
VPS33A-209ENST00000544349 TMEM208Q9BTX3 173 aa10.81□□□□□ -0.68
VPS33A-209ENST00000544349 MSRB1Q9NZV6 116 aa10.81□□□□□ -0.68
VPS33A-209ENST00000544349 BMI1P35226 326 aa10.81□□□□□ -0.68
VPS33A-209ENST00000544349 RPL11P62913 178 aaKnown RBP10.81□□□□□ -0.68
VPS33A-209ENST00000544349 PRELID3AQ96N28 172 aa10.81□□□□□ -0.68
VPS33A-209ENST00000544349 SIGLEC8Q9NYZ4 499 aa10.81□□□□□ -0.68
VPS33A-209ENST00000544349 OR5AL1P0C617 328 aa10.8□□□□□ -0.68
VPS33A-209ENST00000544349 FXYD7P58549 80 aa10.8□□□□□ -0.68
VPS33A-209ENST00000544349 DEFB136Q30KP8 78 aa10.8□□□□□ -0.68
VPS33A-209ENST00000544349 FA2HQ7L5A8 372 aa10.8□□□□□ -0.68
VPS33A-209ENST00000544349 LINC01006Q8NI28 216 aa10.8□□□□□ -0.68
VPS33A-209ENST00000544349 C20orf202A1L168 122 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 ORM1P02763 201 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 HINT1P49773 126 aaPredicted RBP10.79□□□□□ -0.68
VPS33A-209ENST00000544349 TWIST1Q15672 202 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 KHDC1LQ5JSQ8 128 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 COL5A1-AS1Q5SY13 56 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 OR11H1Q8NG94 326 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 PRSS3P2Q8NHM4 247 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 C20orf173Q96LM9 149 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 MAP1LC3CQ9BXW4 147 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 C11orf21Q9P2W6 132 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 SELENOKQ9Y6D0 94 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 LINC01619G3V211 115 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 GAS8-AS1O95177 125 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 NPYP01303 97 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 FOSL1P15407 271 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 DMRTA1Q5VZB9 504 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 PET117Q6UWS5 81 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 Q6ZQT7 251 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 WFDC12Q8WWY7 111 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 JMJD8Q96S16 334 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 ZNF747Q9BV97 191 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 HSPB8Q9UJY1 196 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 HIVEP2P31629 2446 aa10.79□□□□□ -0.68
VPS33A-209ENST00000544349 IGKV3-7A0A075B6H7 116 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 NPSP0C0P6 89 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 SLURP1P55000 103 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 ORMDL3Q8N138 153 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 KLHL30-AS1Q8NEE0 82 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 TMEM191AQ9H0A3 160 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 AGPAT4-IT1Q9H0P7 198 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 MRPS16Q9Y3D3 137 aaKnown RBP10.78□□□□□ -0.68
VPS33A-209ENST00000544349 NOTCH2Q04721 2471 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 RPS20P60866 119 aaKnown RBP10.78□□□□□ -0.68
VPS33A-209ENST00000544349 LINC01545Q5VT33 79 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 HIST2H2BDQ6DRA6 164 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 Q6ZVH6 145 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 OR1N2Q8NGR9 330 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 DPF1Q92782 380 aa10.78□□□□□ -0.68
VPS33A-209ENST00000544349 INAFM1C9JVW0 142 aa10.77□□□□□ -0.69
VPS33A-209ENST00000544349 DLEU1O43261 78 aa10.77□□□□□ -0.69
VPS33A-209ENST00000544349 LINC01559Q495D7 138 aa10.77□□□□□ -0.69
VPS33A-209ENST00000544349 C9orf47Q6ZRZ4 202 aa10.77□□□□□ -0.69
VPS33A-209ENST00000544349 ZNF738Q8NE65 137 aa10.77□□□□□ -0.69
VPS33A-209ENST00000544349 OR10AG1Q8NH19 301 aa10.77□□□□□ -0.69
VPS33A-209ENST00000544349 RNF185Q96GF1 192 aa10.77□□□□□ -0.69
VPS33A-209ENST00000544349 ST20Q9HBF5 79 aa10.77□□□□□ -0.69
VPS33A-209ENST00000544349 CUBNO60494 3623 aa10.77□□□□□ -0.69
VPS33A-209ENST00000544349 IGKV3D-20A0A0C4DH25 116 aa10.76□□□□□ -0.69
VPS33A-209ENST00000544349 CD28P10747 220 aa10.76□□□□□ -0.69
VPS33A-209ENST00000544349 SRSF2Q01130 221 aaKnown RBP10.76□□□□□ -0.69
VPS33A-209ENST00000544349 DCANP1Q8TF63 244 aa10.76□□□□□ -0.69
VPS33A-209ENST00000544349 FABP5P3A8MUU1 101 aa10.76□□□□□ -0.69
VPS33A-209ENST00000544349 TMEM78Q5T7P6 136 aa10.76□□□□□ -0.69
VPS33A-209ENST00000544349 DUX3Q96PT4 197 aa10.76□□□□□ -0.69
VPS33A-209ENST00000544349 CNFNQ9BYD5 112 aa10.76□□□□□ -0.69
VPS33A-209ENST00000544349 PPP1R14DQ9NXH3 145 aa10.76□□□□□ -0.69
VPS33A-209ENST00000544349 NDUFA7O95182 113 aa10.75□□□□□ -0.69
VPS33A-209ENST00000544349 CKS2P33552 79 aa10.75□□□□□ -0.69
VPS33A-209ENST00000544349 C11orf44Q8N8P7 122 aa10.75□□□□□ -0.69
VPS33A-209ENST00000544349 OR8A1Q8NGG7 326 aa10.75□□□□□ -0.69
VPS33A-209ENST00000544349 SCRT2Q9NQ03 307 aa10.75□□□□□ -0.69
VPS33A-209ENST00000544349 OTOGQ6ZRI0 2925 aa10.75□□□□□ -0.69
VPS33A-209ENST00000544349 OVOL1O14753 267 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms