RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 FREM1Q5H8C1 2179 aa11.05□□□□□ -0.64
COLCA1-204ENST00000540738 IGKV1-17P01599 117 aa11.05□□□□□ -0.64
COLCA1-204ENST00000540738 TIMM21Q9BVV7 248 aa11.05□□□□□ -0.64
COLCA1-204ENST00000540738 LINC00574Q9H8X3 128 aa11.05□□□□□ -0.64
COLCA1-204ENST00000540738 PTPRSQ13332 1948 aa11.05□□□□□ -0.64
COLCA1-204ENST00000540738 CFHR4Q92496 578 aa11.05□□□□□ -0.64
COLCA1-204ENST00000540738 F8WEM9 126 aa11.05□□□□□ -0.64
COLCA1-204ENST00000540738 UBE2CO00762 179 aa11.05□□□□□ -0.64
COLCA1-204ENST00000540738 MYO18BQ8IUG5 2567 aa11.04□□□□□ -0.64
COLCA1-204ENST00000540738 BUB3O43684 328 aa11.04□□□□□ -0.64
COLCA1-204ENST00000540738 FAM104BQ5XKR9 115 aa11.04□□□□□ -0.64
COLCA1-204ENST00000540738 DEFB104AQ8WTQ1 72 aa11.04□□□□□ -0.64
COLCA1-204ENST00000540738 NAV3Q8IVL0 2385 aa11.04□□□□□ -0.64
COLCA1-204ENST00000540738 TEX22C9J3V5 150 aa11.04□□□□□ -0.64
COLCA1-204ENST00000540738 KLF5Q13887 457 aaPredicted RBP11.04□□□□□ -0.64
COLCA1-204ENST00000540738 SMKR1H3BMG3 65 aa11.04□□□□□ -0.64
COLCA1-204ENST00000540738 DYNAPQ8N1N2 210 aa11.04□□□□□ -0.64
COLCA1-204ENST00000540738 A0A096LPF7 62 aa11.03□□□□□ -0.64
COLCA1-204ENST00000540738 TMEM213A2RRL7 107 aa11.03□□□□□ -0.64
COLCA1-204ENST00000540738 IGF1P05019 195 aa11.03□□□□□ -0.64
COLCA1-204ENST00000540738 LYPD6Q86Y78 171 aa11.03□□□□□ -0.64
COLCA1-204ENST00000540738 LURAP1LQ8IV03 231 aa11.03□□□□□ -0.64
COLCA1-204ENST00000540738 ODF3L1Q8IXM7 274 aa11.03□□□□□ -0.64
COLCA1-204ENST00000540738 ZNF48Q96MX3 618 aaPredicted RBP11.03□□□□□ -0.64
COLCA1-204ENST00000540738 TP53TG1Q9Y2A0 90 aa11.03□□□□□ -0.64
COLCA1-204ENST00000540738 IGKV2D-24A0A075B6R9 120 aa11.02□□□□□ -0.64
COLCA1-204ENST00000540738 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.02□□□□□ -0.64
COLCA1-204ENST00000540738 C14orf144Q96I85 54 aa11.02□□□□□ -0.64
COLCA1-204ENST00000540738 HIVEP3Q5T1R4 2406 aa11.02□□□□□ -0.65
COLCA1-204ENST00000540738 SNAI2O43623 268 aa11.02□□□□□ -0.65
COLCA1-204ENST00000540738 PLP1P60201 277 aa11.02□□□□□ -0.65
COLCA1-204ENST00000540738 C20orf144Q9BQM9 153 aa11.02□□□□□ -0.65
COLCA1-204ENST00000540738 DEFB135Q30KP9 77 aa11.02□□□□□ -0.65
COLCA1-204ENST00000540738 NKAPP1Q8N9T2 125 aa11.02□□□□□ -0.65
COLCA1-204ENST00000540738 C1orf43Q9BWL3 253 aa11.02□□□□□ -0.65
COLCA1-204ENST00000540738 Q8N8P6 123 aa11.02□□□□□ -0.65
COLCA1-204ENST00000540738 HILS1P60008 231 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 C2orf66Q6UXQ4 117 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 Q6ZSV7 163 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 C11orf52Q96A22 123 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 LEPROTO15243 131 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 HLA-DRB4P13762 266 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 ZC2HC1AQ96GY0 325 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 HLA-DRB4X5D2U9 266 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 IGHV3-38A0A0C4DH36 116 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 HLA-DMBP28068 263 aa11.01□□□□□ -0.65
COLCA1-204ENST00000540738 COL5A1P20908 1838 aaPredicted RBP11.01□□□□□ -0.65
COLCA1-204ENST00000540738 DYSFO75923 2080 aa11□□□□□ -0.65
COLCA1-204ENST00000540738 PAX2Q02962 417 aa11□□□□□ -0.65
COLCA1-204ENST00000540738 TMEM61Q8N0U2 210 aa11□□□□□ -0.65
COLCA1-204ENST00000540738 IGKV1OR2-108A0A075B7D4 117 aa11□□□□□ -0.65
COLCA1-204ENST00000540738 F8W735 103 aaPredicted RBP11□□□□□ -0.65
COLCA1-204ENST00000540738 CRLF1O75462 422 aa11□□□□□ -0.65
COLCA1-204ENST00000540738 WI2-2373I1.2A0A1W2PRP0 233 aa10.99□□□□□ -0.65
COLCA1-204ENST00000540738 C17orf77Q96MU5 243 aa10.99□□□□□ -0.65
COLCA1-204ENST00000540738 TLN1Q9Y490 2541 aaKnown RBP10.99□□□□□ -0.65
COLCA1-204ENST00000540738 DDTP30046 118 aa10.99□□□□□ -0.65
COLCA1-204ENST00000540738 DNAJC30Q96LL9 226 aa10.99□□□□□ -0.65
COLCA1-204ENST00000540738 DMRT1Q9Y5R6 373 aa10.99□□□□□ -0.65
COLCA1-204ENST00000540738 K7ERU9 68 aa10.99□□□□□ -0.65
COLCA1-204ENST00000540738 C20orf78Q9BR46 151 aa10.99□□□□□ -0.65
COLCA1-204ENST00000540738 GYPEP15421 78 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 ATP6V0E2Q8NHE4 81 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 TM2D2Q9BX73 214 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 CDK2AP2O75956 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 ATRAIDQ6UW56 229 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST1H2BKO60814 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 LTAP01374 205 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST1H2BJP06899 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST1H2BOP23527 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST1H2BBP33778 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST1H2BDP58876 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST1H2BCP62807 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST2H2BEQ16778 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST1H2BHQ93079 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST1H2BNQ99877 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 HIST1H2BMQ99879 126 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 SPATA25Q9BR10 227 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 LGALS9O00182 355 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 SPRY2O43597 315 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 PMVKQ15126 192 aa10.98□□□□□ -0.65
COLCA1-204ENST00000540738 ZNF726P1Q15940 193 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 DOCK11Q5JSL3 2073 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 H3BMM0 161 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 GNRH2O43555 120 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 PRR31Q5SQ13 230 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 UBE2WQ96B02 151 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 MED12LQ86YW9 2145 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 TSPAN13O95857 204 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 CHAC1Q9BUX1 264 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 Q9HAA7 133 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 SIGLEC8Q9NYZ4 499 aa10.97□□□□□ -0.65
COLCA1-204ENST00000540738 EBI3Q14213 229 aa10.96□□□□□ -0.65
COLCA1-204ENST00000540738 NDUFS6O75380 124 aaKnown RBP10.96□□□□□ -0.66
COLCA1-204ENST00000540738 CYYR1Q96J86 154 aa10.96□□□□□ -0.66
COLCA1-204ENST00000540738 SMIM2Q9BVW6 85 aa10.96□□□□□ -0.66
COLCA1-204ENST00000540738 EML6Q6ZMW3 1958 aa10.96□□□□□ -0.66
COLCA1-204ENST00000540738 A8MWP6 167 aa10.96□□□□□ -0.66
COLCA1-204ENST00000540738 CXCL1P09341 107 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms