RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 PRTN3P24158 256 aa10.07□□□□□ -0.8
MSH6-210ENST00000540021 FANCD2OSQ96PS1 177 aa10.07□□□□□ -0.8
MSH6-210ENST00000540021 TRAV2A0A0B4J234 112 aa10.07□□□□□ -0.8
MSH6-210ENST00000540021 F8W1H4 67 aa10.07□□□□□ -0.8
MSH6-210ENST00000540021 SPINK8P0C7L1 97 aa10.07□□□□□ -0.8
MSH6-210ENST00000540021 C8orf86Q6ZUL3 223 aa10.07□□□□□ -0.8
MSH6-210ENST00000540021 KLHL30-AS1Q8NEE0 82 aa10.07□□□□□ -0.8
MSH6-210ENST00000540021 SUMO2P61956 95 aaKnown RBP10.06□□□□□ -0.8
MSH6-210ENST00000540021 DLX4Q92988 240 aaPredicted RBP10.06□□□□□ -0.8
MSH6-210ENST00000540021 RPL39LQ96EH5 51 aaKnown RBP10.06□□□□□ -0.8
MSH6-210ENST00000540021 IGLV11-55A0A075B6I3 123 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 MYMXA0A1B0GTQ4 84 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 WI2-2373I1.2A0A1W2PRP0 233 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 F8VRH5 84 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 CD7P09564 240 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 PAX8Q06710 450 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 SRSF8Q9BRL6 282 aaKnown RBP10.06□□□□□ -0.8
MSH6-210ENST00000540021 TRAV8-2A0A0B4J237 113 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 TRAV21A0A0B4J279 112 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 KHDC1LQ5JSQ8 128 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 FOXI2Q6ZQN5 318 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 MAPKAPK5-AS1Q8N8E1 139 aa10.06□□□□□ -0.8
MSH6-210ENST00000540021 F6UB75 175 aa10.05□□□□□ -0.8
MSH6-210ENST00000540021 IGHV4-39P01824 125 aa10.05□□□□□ -0.8
MSH6-210ENST00000540021 IGFL3Q6UXB1 125 aa10.05□□□□□ -0.8
MSH6-210ENST00000540021 SMIM2Q9BVW6 85 aa10.05□□□□□ -0.8
MSH6-210ENST00000540021 ADGRG4Q8IZF6 3080 aa10.05□□□□□ -0.8
MSH6-210ENST00000540021 WNK1Q9H4A3 2382 aa10.05□□□□□ -0.8
MSH6-210ENST00000540021 A0A087WX48 190 aa10.05□□□□□ -0.8
MSH6-210ENST00000540021 FAM208BQ5VWN6 2430 aa10.05□□□□□ -0.8
MSH6-210ENST00000540021 PTPN13Q12923 2485 aa10.05□□□□□ -0.8
MSH6-210ENST00000540021 BRD3OSQ6XYD6 125 aa10.04□□□□□ -0.8
MSH6-210ENST00000540021 DCHS1Q96JQ0 3298 aa10.04□□□□□ -0.8
MSH6-210ENST00000540021 CUL9Q8IWT3 2517 aa10.04□□□□□ -0.8
MSH6-210ENST00000540021 CRYGBP07316 175 aa10.04□□□□□ -0.8
MSH6-210ENST00000540021 RRN3P1Q2M238 152 aa10.04□□□□□ -0.8
MSH6-210ENST00000540021 DPH3P1Q9H4G8 78 aa10.04□□□□□ -0.8
MSH6-210ENST00000540021 DMXL2Q8TDJ6 3036 aa10.04□□□□□ -0.8
MSH6-210ENST00000540021 NPC2P61916 151 aa10.04□□□□□ -0.8
MSH6-210ENST00000540021 C1orf122Q6ZSJ8 110 aa10.04□□□□□ -0.8
MSH6-210ENST00000540021 KALRNO60229 2985 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 SAA4P35542 130 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 PTH2Q96A98 100 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 A8MWV9 139 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 UFSP1Q6NVU6 142 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 TP53TG1Q9Y2A0 90 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 CACNA1AO00555 2505 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 CFAP47Q6ZTR5 3102 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 MYO9AB2RTY4 2548 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 Q6ZQT7 251 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 ATP6V0BQ99437 205 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 TACC2O95359 2948 aa10.03□□□□□ -0.8
MSH6-210ENST00000540021 IGKV3D-20A0A0C4DH25 116 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 PRSS29PA6NIE9 313 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 ANXA2RQ3ZCQ2 193 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 LINC01559Q495D7 138 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 SPAG8Q99932 426 aaPredicted RBP10.02□□□□□ -0.81
MSH6-210ENST00000540021 ACACBO00763 2458 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 IGHV7-81A0A0B4J1V7 117 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 TRAV12-3A0A0B4J271 114 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 GNRH2O43555 120 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 RNF185Q96GF1 192 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 C20orf78Q9BR46 151 aa10.02□□□□□ -0.81
MSH6-210ENST00000540021 GEMIN7Q9H840 131 aaKnown RBP10.02□□□□□ -0.81
MSH6-210ENST00000540021 TRBV6-1A0A0K0K1D8 114 aa10.01□□□□□ -0.81
MSH6-210ENST00000540021 IGLC6P0CF74 106 aa10.01□□□□□ -0.81
MSH6-210ENST00000540021 MRGPRG-AS1Q2M3A8 158 aa10.01□□□□□ -0.81
MSH6-210ENST00000540021 BUB3O43684 328 aa10.01□□□□□ -0.81
MSH6-210ENST00000540021 ANAPC13Q9BS18 74 aa10.01□□□□□ -0.81
MSH6-210ENST00000540021 INSL3P51460 131 aa10.01□□□□□ -0.81
MSH6-210ENST00000540021 PIP4P1Q86T03 277 aa10.01□□□□□ -0.81
MSH6-210ENST00000540021 IGHV3-73A0A0B4J1V6 119 aa10□□□□□ -0.81
MSH6-210ENST00000540021 TRAV41A0A0B4J266 112 aa10□□□□□ -0.81
MSH6-210ENST00000540021 C9JAW5 83 aa10□□□□□ -0.81
MSH6-210ENST00000540021 DGAT2L7PQ6IED9 249 aa10□□□□□ -0.81
MSH6-210ENST00000540021 HIGD1BQ9P298 99 aa10□□□□□ -0.81
MSH6-210ENST00000540021 MAP1AP78559 2803 aaPredicted RBP10□□□□□ -0.81
MSH6-210ENST00000540021 M0R1W7 72 aa10□□□□□ -0.81
MSH6-210ENST00000540021 IGF1P05019 195 aa10□□□□□ -0.81
MSH6-210ENST00000540021 SMAD5-AS1Q9Y6J3 95 aa10□□□□□ -0.81
MSH6-210ENST00000540021 SETD2Q9BYW2 2564 aaPredicted RBP10□□□□□ -0.81
MSH6-210ENST00000540021 TTC32Q5I0X7 151 aa10□□□□□ -0.81
MSH6-210ENST00000540021 A0A0U1RRA0 63 aa9.99□□□□□ -0.81
MSH6-210ENST00000540021 SNCGO76070 127 aa9.99□□□□□ -0.81
MSH6-210ENST00000540021 U3KQK5 164 aa9.99□□□□□ -0.81
MSH6-210ENST00000540021 DUSP14O95147 198 aaKnown RBP9.99□□□□□ -0.81
MSH6-210ENST00000540021 ID1P41134 155 aa9.99□□□□□ -0.81
MSH6-210ENST00000540021 FAM110DQ8TAY7 271 aaPredicted RBP9.99□□□□□ -0.81
MSH6-210ENST00000540021 LINC00477Q96M19 166 aa9.99□□□□□ -0.81
MSH6-210ENST00000540021 LINC01548A6NM66 108 aa9.99□□□□□ -0.81
MSH6-210ENST00000540021 ZNF688P0C7X2 276 aa9.99□□□□□ -0.81
MSH6-210ENST00000540021 C9orf139Q6ZV77 190 aa9.98□□□□□ -0.81
MSH6-210ENST00000540021 TEX29Q8N6K0 151 aa9.98□□□□□ -0.81
MSH6-210ENST00000540021 TMEM190Q8WZ59 177 aa9.98□□□□□ -0.81
MSH6-210ENST00000540021 MRAP2Q96G30 205 aa9.98□□□□□ -0.81
MSH6-210ENST00000540021 HHLA3Q9XRX5 114 aa9.98□□□□□ -0.81
MSH6-210ENST00000540021 CHD8Q9HCK8 2581 aa9.98□□□□□ -0.81
MSH6-210ENST00000540021 SPANXB1Q9NS25 103 aaPredicted RBP9.98□□□□□ -0.81
MSH6-210ENST00000540021 C11orf21Q9P2W6 132 aa9.98□□□□□ -0.81
MSH6-210ENST00000540021 ADARB2-AS1A8MUL3 147 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms