RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 IAPPP10997 89 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 FCER1GP30273 86 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 GFERP55789 205 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 HERVK_113P61574 105 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 FKBP1AP62942 108 aaKnown RBP1.85□□□□□ -2.11
SKA3-207ENST00000536239 RPL18AQ02543 176 aaKnown RBP1.85□□□□□ -2.11
SKA3-207ENST00000536239 PAX8Q06710 450 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 RPL18Q07020 188 aaKnown RBP1.85□□□□□ -2.11
SKA3-207ENST00000536239 TFF3Q07654 80 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 ZNF816Q0VGE8 651 aaPredicted RBP1.85□□□□□ -2.11
SKA3-207ENST00000536239 ATXN8Q156A1 80 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 C15orf32Q32M92 178 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 CD164L2Q6UWJ8 174 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 ZFP2Q6ZN57 461 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 SDIM1Q6ZPB5 146 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 Q6ZR03 302 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 ZNF818PQ6ZRF7 136 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 Q6ZRU5 148 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 MRPL55Q7Z7F7 128 aaKnown RBP1.85□□□□□ -2.11
SKA3-207ENST00000536239 NDUFA11Q86Y39 141 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 RNF182Q8N6D2 247 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 SMIM14Q96QK8 99 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 DSCR8Q96T75 97 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 UPK3BQ9BT76 320 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 RTL8AQ9BWD3 113 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 AICDAQ9GZX7 198 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 ZNF442Q9H7R0 627 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 PLEKHA3Q9HB20 300 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 DYNLRB1Q9NP97 96 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 ZNF355PQ9NSJ1 428 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 ZNF492Q9P255 531 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 AMMECR1Q9Y4X0 333 aaPredicted RBP1.85□□□□□ -2.11
SKA3-207ENST00000536239 ARID1AO14497 2285 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 CEP192Q8TEP8 1941 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 HEATR1Q9H583 2144 aaKnown RBP1.84□□□□□ -2.11
SKA3-207ENST00000536239 TMSB15BA0A087X1C1 80 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 A0A096LNJ9 63 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 IGKV2D-26A0A0A0MRZ7 120 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 A0A0B4J2C4 111 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 IGKV1-9A0A0C4DH69 117 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 TRBV7-6A0A0J9YX20 115 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 A0A0U1RQV1 116 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 CXorf51AA0A1B0GTR3 108 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 WI2-2373I1.2A0A1W2PRP0 233 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 KNCNA6PVL3 124 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 ATP6V0E1O15342 81 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 CCL16O15467 120 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 BCE1O60756 84 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 CISD3P0C7P0 127 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 VPREB1P12018 145 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 GP9P14770 177 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 PLNP26678 52 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 MYCNOSP40205 109 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 RPS27P42677 84 aaKnown RBP1.84□□□□□ -2.11
SKA3-207ENST00000536239 SPINT3P49223 89 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 ZNF138P52744 262 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 ATP5EP56381 51 aaPredicted RBP1.84□□□□□ -2.11
SKA3-207ENST00000536239 PCBD1P61457 104 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 ERVK-16P61578 105 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 SRSF9Q13242 221 aaKnown RBP eCLIP1.84□□□□□ -2.11
SKA3-207ENST00000536239 HIGD2BQ4VC39 106 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 FHL5Q5TD97 284 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 CEMP1Q6PRD7 247 aaPredicted RBP1.84□□□□□ -2.11
SKA3-207ENST00000536239 PRR15Q8IV56 129 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 TDHQ8IZJ6 230 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 LINC01561Q8N1V8 128 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP1.84□□□□□ -2.11
SKA3-207ENST00000536239 C10orf105Q8TEF2 133 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 BRK1Q8WUW1 75 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 SRXN1Q9BYN0 137 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 RPP21Q9H633 154 aaKnown RBP1.84□□□□□ -2.11
SKA3-207ENST00000536239 C16orf95Q9H693 158 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 OTORQ9NRC9 128 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 CCL28Q9NRJ3 127 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 CALYQ9NYX4 217 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 TAC3Q9UHF0 121 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 PRO1854Q9UHT4 67 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 RPUSD1Q9UJJ7 312 aaKnown RBP1.84□□□□□ -2.11
SKA3-207ENST00000536239 U3KQK5 164 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 MYO7AQ13402 2215 aa1.84□□□□□ -2.11
SKA3-207ENST00000536239 IGKV1D-42A0A075B6H8 117 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 TRBV19A0A075B6N1 114 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 TRBV6-6A0A0A6YYG2 114 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 TRBV30A0A0K0K1B3 111 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 TEX49A0A1B0GTD5 131 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 A0A1B0GUT8 65 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 SRRM4A7MD48 611 aaKnown RBP1.83□□□□□ -2.12
SKA3-207ENST00000536239 INS-IGF2F8WCM5 200 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 M0R1B8 84 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 MRPS12O15235 138 aaKnown RBP1.83□□□□□ -2.12
SKA3-207ENST00000536239 SCRG1O75711 98 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 IGKV1-5P01602 117 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 IGLV3-1P01715 115 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 TCRAP04437 139 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 SLC25A16P16260 332 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 IFI27P40305 119 aaPredicted RBP1.83□□□□□ -2.12
SKA3-207ENST00000536239 EMDP50402 254 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 EDDM3BP56851 147 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 SYNJ2BPP57105 145 aa1.83□□□□□ -2.12
SKA3-207ENST00000536239 POLR2LP62875 67 aaKnown RBP1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms