RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 PCP4P48539 62 aa12.18□□□□□ -0.46
CHMP1A-202ENST00000535997 C10orf105Q8TEF2 133 aa12.18□□□□□ -0.46
CHMP1A-202ENST00000535997 FOXC2Q99958 501 aa12.18□□□□□ -0.46
CHMP1A-202ENST00000535997 TRAV26-2A0A0B4J265 109 aa12.17□□□□□ -0.46
CHMP1A-202ENST00000535997 RBX1P62877 108 aa12.17□□□□□ -0.46
CHMP1A-202ENST00000535997 CELSR1Q9NYQ6 3014 aa12.17□□□□□ -0.46
CHMP1A-202ENST00000535997 A6NDX4 124 aa12.17□□□□□ -0.46
CHMP1A-202ENST00000535997 C9orf118A6NHY6 69 aa12.17□□□□□ -0.46
CHMP1A-202ENST00000535997 IGHV4-38-2P0DP08 117 aa12.17□□□□□ -0.46
CHMP1A-202ENST00000535997 KIR3DS1Q14943 382 aa12.17□□□□□ -0.46
CHMP1A-202ENST00000535997 HIGD1BQ9P298 99 aa12.17□□□□□ -0.46
CHMP1A-202ENST00000535997 AP1S3Q96PC3 154 aa12.16□□□□□ -0.46
CHMP1A-202ENST00000535997 TRBV7-9A0A0J9YWB2 115 aa12.16□□□□□ -0.46
CHMP1A-202ENST00000535997 TMEM8BA6NDV4 472 aa12.16□□□□□ -0.46
CHMP1A-202ENST00000535997 LY6EQ16553 131 aa12.16□□□□□ -0.46
CHMP1A-202ENST00000535997 IGKV2D-26A0A0A0MRZ7 120 aa12.15□□□□□ -0.46
CHMP1A-202ENST00000535997 A0A0G2JLM5 398 aa12.15□□□□□ -0.46
CHMP1A-202ENST00000535997 H3BUX3 64 aa12.15□□□□□ -0.46
CHMP1A-202ENST00000535997 FAM19A4Q96LR4 140 aa12.15□□□□□ -0.46
CHMP1A-202ENST00000535997 CCL19Q99731 98 aa12.15□□□□□ -0.46
CHMP1A-202ENST00000535997 KLK15Q9H2R5 256 aa12.15□□□□□ -0.46
CHMP1A-202ENST00000535997 GAGE12BA1L429 117 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 GAGE10A6NGK3 116 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 S100A4P26447 101 aaKnown RBP12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 RPL11P62913 178 aaKnown RBP12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 CLEC2AQ6UVW9 174 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 IGHV3-11P01762 117 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 MED14OSP0DP75 135 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 PF4V1P10720 104 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 ASIPP42127 132 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 CDKN1BP46527 198 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 BLCAPP62952 87 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 ZC2HC1BQ5TFG8 222 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 APRG1Q8IVJ8 170 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 C20orf78Q9BR46 151 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 SMIM2Q9BVW6 85 aa12.14□□□□□ -0.47
CHMP1A-202ENST00000535997 J3KRW8 73 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 K7EMI3 77 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 IGLV1-40P01703 118 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 HLA-DRB4P13762 266 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 C21orf62-AS1Q17RA5 79 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 GTF2H5Q6ZYL4 71 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 CST9LQ9H4G1 147 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 TMEM160Q9NX00 188 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 PHLDA3Q9Y5J5 127 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 HLA-DRB4X5D2U9 266 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 A0A087WX48 190 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 M0R381 172 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 ORMDL2Q53FV1 153 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 RHPN1-AS1Q9BWJ2 59 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 DPH3P1Q9H4G8 78 aa12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 MRPL35Q9NZE8 188 aaKnown RBP12.13□□□□□ -0.47
CHMP1A-202ENST00000535997 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.12□□□□□ -0.47
CHMP1A-202ENST00000535997 SUMO2P61956 95 aaKnown RBP12.12□□□□□ -0.47
CHMP1A-202ENST00000535997 GTSCR1Q86UQ5 136 aa12.12□□□□□ -0.47
CHMP1A-202ENST00000535997 MSMBP08118 114 aa12.12□□□□□ -0.47
CHMP1A-202ENST00000535997 RNASE4P34096 147 aaKnown RBP12.12□□□□□ -0.47
CHMP1A-202ENST00000535997 ATP5J2P56134 94 aa12.12□□□□□ -0.47
CHMP1A-202ENST00000535997 ANXA2RQ3ZCQ2 193 aa12.12□□□□□ -0.47
CHMP1A-202ENST00000535997 DAZ1Q9NQZ3 744 aaKnown RBP12.12□□□□□ -0.47
CHMP1A-202ENST00000535997 H3BUT2 72 aa12.11□□□□□ -0.47
CHMP1A-202ENST00000535997 PLNP26678 52 aa12.11□□□□□ -0.47
CHMP1A-202ENST00000535997 UFSP1Q6NVU6 142 aa12.11□□□□□ -0.47
CHMP1A-202ENST00000535997 TRBV25-1A0A075B6N4 114 aa12.11□□□□□ -0.47
CHMP1A-202ENST00000535997 TRAV12-1A0A0B4J245 112 aa12.11□□□□□ -0.47
CHMP1A-202ENST00000535997 OCIAD2Q56VL3 154 aa12.11□□□□□ -0.47
CHMP1A-202ENST00000535997 C14orf178Q8N769 122 aaPredicted RBP12.11□□□□□ -0.47
CHMP1A-202ENST00000535997 RASL10AQ92737 203 aa12.11□□□□□ -0.47
CHMP1A-202ENST00000535997 IGHV4-30-2A0A087WSY4 118 aa12.1□□□□□ -0.47
CHMP1A-202ENST00000535997 PPP1R17O96001 155 aa12.1□□□□□ -0.47
CHMP1A-202ENST00000535997 SLC25A16P16260 332 aa12.1□□□□□ -0.47
CHMP1A-202ENST00000535997 DEFB1P60022 68 aa12.1□□□□□ -0.47
CHMP1A-202ENST00000535997 TM4SF20Q53R12 229 aa12.1□□□□□ -0.47
CHMP1A-202ENST00000535997 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.1□□□□□ -0.471e-6■■■□□ 14.7
CHMP1A-202ENST00000535997 Q6ZS46 218 aa12.1□□□□□ -0.47
CHMP1A-202ENST00000535997 SPG11Q96JI7 2443 aa12.1□□□□□ -0.47
CHMP1A-202ENST00000535997 K7EMT4 169 aa12.09□□□□□ -0.47
CHMP1A-202ENST00000535997 SMIM13P0DJ93 91 aa12.09□□□□□ -0.47
CHMP1A-202ENST00000535997 TOMM6Q96B49 74 aa12.09□□□□□ -0.47
CHMP1A-202ENST00000535997 COL12A1Q99715 3063 aa12.09□□□□□ -0.47
CHMP1A-202ENST00000535997 F6UB75 175 aa12.09□□□□□ -0.47
CHMP1A-202ENST00000535997 H7C1H1 209 aa12.09□□□□□ -0.47
CHMP1A-202ENST00000535997 CFHR3Q02985 330 aa12.09□□□□□ -0.47
CHMP1A-202ENST00000535997 CHAC1Q9BUX1 264 aa12.09□□□□□ -0.47
CHMP1A-202ENST00000535997 TTTY13Q9BZ97 58 aa12.09□□□□□ -0.47
CHMP1A-202ENST00000535997 GNRH2O43555 120 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 RNASE3P12724 160 aaKnown RBP12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 SAMD13Q5VXD3 122 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 ZNF580Q9UK33 172 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 MAP1AP78559 2803 aaPredicted RBP12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 IGKV3-7A0A075B6H7 116 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 F8VRH5 84 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 GCSHP23434 173 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 LCNL1Q6ZST4 164 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 RAB37Q96AX2 223 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 JMJD8Q96S16 334 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 TM2D2Q9BX73 214 aa12.08□□□□□ -0.48
CHMP1A-202ENST00000535997 B4DSR2 109 aa12.07□□□□□ -0.48
CHMP1A-202ENST00000535997 K7EP34 96 aa12.07□□□□□ -0.48
CHMP1A-202ENST00000535997 ID1P41134 155 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms