RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 TYMSP04818 313 aa15.72■□□□□ 0.11
CPSF1-202ENST00000527827 Q9HAA7 133 aa15.72■□□□□ 0.11
CPSF1-202ENST00000527827 LRRC37A5PQ49AS3 106 aa15.71■□□□□ 0.11
CPSF1-202ENST00000527827 KHDC3LQ587J8 217 aa15.71■□□□□ 0.11
CPSF1-202ENST00000527827 FFAR4Q5NUL3 377 aa15.71■□□□□ 0.11
CPSF1-202ENST00000527827 TVP23CQ96ET8 276 aa15.71■□□□□ 0.11
CPSF1-202ENST00000527827 CCDC32Q9BV29 185 aa15.71■□□□□ 0.11
CPSF1-202ENST00000527827 NMES1Q9C002 83 aa15.71■□□□□ 0.11
CPSF1-202ENST00000527827 TRAV21A0A0B4J279 112 aa15.7■□□□□ 0.1
CPSF1-202ENST00000527827 EIF3GO75821 320 aaKnown RBP eCLIP15.7■□□□□ 0.1
CPSF1-202ENST00000527827 OTORQ9NRC9 128 aa15.7■□□□□ 0.1
CPSF1-202ENST00000527827 RPH3ALQ9UNE2 315 aa15.7■□□□□ 0.1
CPSF1-202ENST00000527827 TRAV8-6A0A0B4J262 113 aa15.69■□□□□ 0.1
CPSF1-202ENST00000527827 PGPA6NDG6 321 aa15.69■□□□□ 0.1
CPSF1-202ENST00000527827 F6UZH7 168 aa15.69■□□□□ 0.1
CPSF1-202ENST00000527827 J3QL48 77 aa15.69■□□□□ 0.1
CPSF1-202ENST00000527827 PFN1P07737 140 aaKnown RBP15.69■□□□□ 0.1
CPSF1-202ENST00000527827 SLC25A29Q8N8R3 303 aa15.69■□□□□ 0.1
CPSF1-202ENST00000527827 ATP5SQ99766 215 aa15.69■□□□□ 0.1
CPSF1-202ENST00000527827 FBLL1A6NHQ2 334 aaKnown RBP15.68■□□□□ 0.1
CPSF1-202ENST00000527827 IGHV3-30P01768 117 aa15.68■□□□□ 0.1
CPSF1-202ENST00000527827 IGHV3-33P01772 117 aa15.68■□□□□ 0.1
CPSF1-202ENST00000527827 IGHV3-30-3P0DP02 117 aa15.68■□□□□ 0.1
CPSF1-202ENST00000527827 IGHV3-30-5P0DP03 117 aa15.68■□□□□ 0.1
CPSF1-202ENST00000527827 TAS2R45P59539 299 aa15.68■□□□□ 0.1
CPSF1-202ENST00000527827 OR10J3Q5JRS4 329 aa15.68■□□□□ 0.1
CPSF1-202ENST00000527827 GOLT1AQ6ZVE7 132 aa15.68■□□□□ 0.1
CPSF1-202ENST00000527827 CMTM2Q8TAZ6 248 aa15.68■□□□□ 0.1
CPSF1-202ENST00000527827 SDF2L1Q9HCN8 221 aa15.68■□□□□ 0.1
CPSF1-202ENST00000527827 TRAV8-1A0A0A6YYK1 113 aa15.67■□□□□ 0.1
CPSF1-202ENST00000527827 C1QBP02746 253 aa15.67■□□□□ 0.1
CPSF1-202ENST00000527827 MBD2Q9UBB5 411 aa15.67■□□□□ 0.1
CPSF1-202ENST00000527827 WFDC2Q14508 124 aa15.66■□□□□ 0.1
CPSF1-202ENST00000527827 LELP1Q5T871 98 aa15.66■□□□□ 0.1
CPSF1-202ENST00000527827 MZT2BQ6NZ67 158 aa15.66■□□□□ 0.1
CPSF1-202ENST00000527827 DPPA3Q6W0C5 159 aa15.66■□□□□ 0.1
CPSF1-202ENST00000527827 KCNS1Q96KK3 526 aa15.66■□□□□ 0.1
CPSF1-202ENST00000527827 TREM1Q9NP99 234 aa15.66■□□□□ 0.1
CPSF1-202ENST00000527827 BOLA1Q9Y3E2 137 aa15.66■□□□□ 0.1
CPSF1-202ENST00000527827 RS1O15537 224 aa15.65■□□□□ 0.1
CPSF1-202ENST00000527827 RHOHQ15669 191 aa15.65■□□□□ 0.1
CPSF1-202ENST00000527827 FAM74A1Q5RGS3 127 aa15.65■□□□□ 0.1
CPSF1-202ENST00000527827 CFAP126Q5VTH2 177 aa15.65■□□□□ 0.1
CPSF1-202ENST00000527827 ASB13Q8WXK3 278 aa15.65■□□□□ 0.1
CPSF1-202ENST00000527827 PRADC1Q9BSG0 188 aa15.65■□□□□ 0.1
CPSF1-202ENST00000527827 TRBV6-4A0A1B0GX49 114 aa15.64■□□□□ 0.09
CPSF1-202ENST00000527827 ASAH1Q13510 395 aa15.64■□□□□ 0.09
CPSF1-202ENST00000527827 ZNF876PQ49A33 203 aa15.64■□□□□ 0.09
CPSF1-202ENST00000527827 ARL6IP6Q8N6S5 226 aa15.64■□□□□ 0.09
CPSF1-202ENST00000527827 HSPB11Q9Y547 144 aa15.64■□□□□ 0.09
CPSF1-202ENST00000527827 IGHV3-73A0A0B4J1V6 119 aa15.63■□□□□ 0.09
CPSF1-202ENST00000527827 GNG5P63218 68 aa15.63■□□□□ 0.09
CPSF1-202ENST00000527827 CYCSP99999 105 aaKnown RBP15.63■□□□□ 0.09
CPSF1-202ENST00000527827 Q6ZSA8 131 aa15.63■□□□□ 0.09
CPSF1-202ENST00000527827 C11orf21Q9P2W6 132 aa15.63■□□□□ 0.09
CPSF1-202ENST00000527827 CIDEAO60543 219 aa15.62■□□□□ 0.09
CPSF1-202ENST00000527827 H2BFSP57053 126 aa15.62■□□□□ 0.09
CPSF1-202ENST00000527827 LAGE3Q14657 143 aa15.62■□□□□ 0.09
CPSF1-202ENST00000527827 Q8N3U1 123 aa15.62■□□□□ 0.09
CPSF1-202ENST00000527827 PPP1R1CQ8WVI7 109 aa15.62■□□□□ 0.09
CPSF1-202ENST00000527827 GTSF1LQ9H1H1 148 aa15.62■□□□□ 0.09
CPSF1-202ENST00000527827 PLA2G1BP04054 148 aaKnown RBP15.61■□□□□ 0.09
CPSF1-202ENST00000527827 ZNF80P51504 273 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-202ENST00000527827 PQLC2Q6ZP29 291 aa15.61■□□□□ 0.09
CPSF1-202ENST00000527827 SCGB1C1Q8TD33 95 aa15.61■□□□□ 0.09
CPSF1-202ENST00000527827 SGK494Q96LW2 274 aa15.61■□□□□ 0.09
CPSF1-202ENST00000527827 TM2D2Q9BX73 214 aa15.61■□□□□ 0.09
CPSF1-202ENST00000527827 SMIM3Q9BZL3 60 aa15.61■□□□□ 0.09
CPSF1-202ENST00000527827 KRTAP29-1A8MX34 341 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-202ENST00000527827 LINC00528Q8N1L1 170 aa15.6■□□□□ 0.09
CPSF1-202ENST00000527827 ATP6V0E2Q8NHE4 81 aa15.6■□□□□ 0.09
CPSF1-202ENST00000527827 C9orf85Q96MD7 179 aa15.6■□□□□ 0.09
CPSF1-202ENST00000527827 PGPEP1LA6NFU8 196 aa15.58■□□□□ 0.08
CPSF1-202ENST00000527827 ZNF506Q5JVG8 444 aa15.58■□□□□ 0.08
CPSF1-202ENST00000527827 ENKURQ8TC29 256 aa15.58■□□□□ 0.08
CPSF1-202ENST00000527827 WFDC1Q9HC57 220 aa15.58■□□□□ 0.08
CPSF1-202ENST00000527827 MPC2O95563 127 aa15.57■□□□□ 0.08
CPSF1-202ENST00000527827 RPL12P30050 165 aaKnown RBP15.57■□□□□ 0.08
CPSF1-202ENST00000527827 RAB2AP61019 212 aa15.57■□□□□ 0.08
CPSF1-202ENST00000527827 ACOT6Q3I5F7 207 aaPredicted RBP15.57■□□□□ 0.08
CPSF1-202ENST00000527827 PTH2Q96A98 100 aa15.57■□□□□ 0.08
CPSF1-202ENST00000527827 A0A1W2PPV4 95 aa15.56■□□□□ 0.08
CPSF1-202ENST00000527827 LECT2O14960 151 aa15.56■□□□□ 0.08
CPSF1-202ENST00000527827 HMGB3O15347 200 aaKnown RBP15.56■□□□□ 0.08
CPSF1-202ENST00000527827 MGST1P10620 155 aaKnown RBP15.56■□□□□ 0.08
CPSF1-202ENST00000527827 TMEM75Q8N9X5 138 aa15.56■□□□□ 0.08
CPSF1-202ENST00000527827 NDFIP1Q9BT67 221 aa15.56■□□□□ 0.08
CPSF1-202ENST00000527827 NDUFA13Q9P0J0 144 aa15.56■□□□□ 0.08
CPSF1-202ENST00000527827 TAAR5O14804 337 aa15.55■□□□□ 0.08
CPSF1-202ENST00000527827 RNASE3P12724 160 aaKnown RBP15.55■□□□□ 0.08
CPSF1-202ENST00000527827 GCGP01275 180 aa15.54■□□□□ 0.08
CPSF1-202ENST00000527827 LINC00694P0DN24 101 aa15.54■□□□□ 0.08
CPSF1-202ENST00000527827 DEFB104AQ8WTQ1 72 aa15.54■□□□□ 0.08
CPSF1-202ENST00000527827 IGLV2-33A0A075B6J2 118 aaPredicted RBP15.53■□□□□ 0.08
CPSF1-202ENST00000527827 TRAV8-3A0A0A6YYJ7 113 aa15.53■□□□□ 0.08
CPSF1-202ENST00000527827 SERTM2A0A1B0GWG4 89 aa15.53■□□□□ 0.08
CPSF1-202ENST00000527827 INMT-MINDY4F8WBC2 141 aa15.53■□□□□ 0.08
CPSF1-202ENST00000527827 TCRAP04437 139 aa15.53■□□□□ 0.08
CPSF1-202ENST00000527827 DAZ4Q86SG3 579 aaKnown RBP15.53■□□□□ 0.08
CPSF1-202ENST00000527827 DAZ3Q9NR90 486 aaKnown RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms