RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 IGLV5-52A0A0A0MRZ9 124 aa11.12□□□□□ -0.63
VIM-208ENST00000497849 PLA2G1BP04054 148 aaKnown RBP11.12□□□□□ -0.63
VIM-208ENST00000497849 HIST1H1EP10412 219 aaKnown RBP11.12□□□□□ -0.63
VIM-208ENST00000497849 FGF8P55075 233 aaPredicted RBP11.12□□□□□ -0.63
VIM-208ENST00000497849 TAS2R45P59539 299 aa11.12□□□□□ -0.63
VIM-208ENST00000497849 Q6ZTI0 123 aa11.12□□□□□ -0.63
VIM-208ENST00000497849 RNF24Q9Y225 148 aa11.12□□□□□ -0.63
VIM-208ENST00000497849 SNURFLB1AK76 121 aa11.11□□□□□ -0.63
VIM-208ENST00000497849 NDUFB4O95168 129 aa11.11□□□□□ -0.63
VIM-208ENST00000497849 CXorf1O96002 111 aa11.11□□□□□ -0.63
VIM-208ENST00000497849 STAG3L2P0CL84 134 aa11.11□□□□□ -0.63
VIM-208ENST00000497849 STAG3L3P0CL85 134 aa11.11□□□□□ -0.63
VIM-208ENST00000497849 CCDC28AQ8IWP9 274 aa11.11□□□□□ -0.63
VIM-208ENST00000497849 SLC7A5P1Q8MH63 180 aa11.11□□□□□ -0.63
VIM-208ENST00000497849 C20orf144Q9BQM9 153 aa11.11□□□□□ -0.63
VIM-208ENST00000497849 TRBV19A0A075B6N1 114 aa11.1□□□□□ -0.63
VIM-208ENST00000497849 NBEAP1P0C6P0 100 aa11.1□□□□□ -0.63
VIM-208ENST00000497849 ARL14EPLP0DKL9 152 aa11.1□□□□□ -0.63
VIM-208ENST00000497849 CCL20P78556 96 aa11.1□□□□□ -0.63
VIM-208ENST00000497849 KHDC3LQ587J8 217 aa11.1□□□□□ -0.63
VIM-208ENST00000497849 IQCF2Q8IXL9 164 aa11.1□□□□□ -0.63
VIM-208ENST00000497849 ZNF331Q9NQX6 463 aaPredicted RBP11.1□□□□□ -0.63
VIM-208ENST00000497849 MSRB1Q9NZV6 116 aa11.1□□□□□ -0.63
VIM-208ENST00000497849 RAB19A4D1S5 217 aa11.09□□□□□ -0.63
VIM-208ENST00000497849 IFNA1P01562 189 aa11.09□□□□□ -0.63
VIM-208ENST00000497849 UBE2L3P68036 154 aaKnown RBP11.09□□□□□ -0.63
VIM-208ENST00000497849 DAZ2Q13117 558 aaKnown RBP11.09□□□□□ -0.63
VIM-208ENST00000497849 PSG3Q16557 428 aa11.09□□□□□ -0.63
VIM-208ENST00000497849 GFI1BQ5VTD9 330 aa11.09□□□□□ -0.63
VIM-208ENST00000497849 PQLC2Q6ZP29 291 aa11.09□□□□□ -0.63
VIM-208ENST00000497849 EXOC3-AS1Q8N2X6 119 aa11.09□□□□□ -0.63
VIM-208ENST00000497849 GCHFRP30047 84 aa11.08□□□□□ -0.64
VIM-208ENST00000497849 PPT1P50897 306 aa11.08□□□□□ -0.64
VIM-208ENST00000497849 LYPD5Q6UWN5 251 aa11.08□□□□□ -0.64
VIM-208ENST00000497849 LINC00528Q8N1L1 170 aa11.08□□□□□ -0.64
VIM-208ENST00000497849 GNG13Q9P2W3 67 aa11.08□□□□□ -0.64
VIM-208ENST00000497849 LY96Q9Y6Y9 160 aa11.08□□□□□ -0.64
VIM-208ENST00000497849 RNF213Q63HN8 5207 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 TRAV9-2A0A087WT02 112 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 LRCOL1A6NCL2 159 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 PRAC2D3DTV9 90 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 NPIPB6E9PJ23 425 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 M0R3E3 92 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 RANP62826 216 aaKnown RBP11.07□□□□□ -0.64
VIM-208ENST00000497849 GUK1Q16774 197 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 NTN5Q8WTR8 489 aaPredicted RBP11.07□□□□□ -0.64
VIM-208ENST00000497849 RPUSD4Q96CM3 377 aaKnown RBP11.07□□□□□ -0.64
VIM-208ENST00000497849 FAM210AQ96ND0 272 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 LINC00467Q9BRT7 94 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 TMEM167BQ9NRX6 74 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 ICOSQ9Y6W8 199 aa11.07□□□□□ -0.64
VIM-208ENST00000497849 TRGV2A0A075B6R0 118 aa11.06□□□□□ -0.64
VIM-208ENST00000497849 RBFOX3A6NFN3 312 aa11.06□□□□□ -0.64
VIM-208ENST00000497849 ZNF324O75467 553 aaPredicted RBP11.06□□□□□ -0.64
VIM-208ENST00000497849 UQCC3Q6UW78 93 aa11.06□□□□□ -0.64
VIM-208ENST00000497849 EIF4E3Q8N5X7 224 aaKnown RBP11.06□□□□□ -0.64
VIM-208ENST00000497849 SLC50A1Q9BRV3 221 aa11.06□□□□□ -0.64
VIM-208ENST00000497849 EIF5A2Q9GZV4 153 aaKnown RBP11.06□□□□□ -0.64
VIM-208ENST00000497849 MANBALQ9NQG1 85 aa11.06□□□□□ -0.64
VIM-208ENST00000497849 TAGLN2P37802 199 aaKnown RBP11.05□□□□□ -0.64
VIM-208ENST00000497849 PEA15Q15121 130 aa11.05□□□□□ -0.64
VIM-208ENST00000497849 TOR2AQ5JU69 321 aa11.05□□□□□ -0.64
VIM-208ENST00000497849 WFDC10BQ8IUB3 73 aa11.05□□□□□ -0.64
VIM-208ENST00000497849 PGPA6NDG6 321 aa11.04□□□□□ -0.64
VIM-208ENST00000497849 PAX4O43316 350 aa11.04□□□□□ -0.64
VIM-208ENST00000497849 ZNF253O75346 499 aa11.04□□□□□ -0.64
VIM-208ENST00000497849 BCL2P10415 239 aa11.04□□□□□ -0.64
VIM-208ENST00000497849 UBE2G2P60604 165 aa11.04□□□□□ -0.64
VIM-208ENST00000497849 ZNF506Q5JVG8 444 aa11.04□□□□□ -0.64
VIM-208ENST00000497849 C11orf72Q8NBR9 251 aa11.04□□□□□ -0.64
VIM-208ENST00000497849 TREM1Q9NP99 234 aa11.04□□□□□ -0.64
VIM-208ENST00000497849 K7EP13 123 aa11.03□□□□□ -0.64
VIM-208ENST00000497849 PAGE4O60829 102 aa11.03□□□□□ -0.64
VIM-208ENST00000497849 OXTP01178 125 aa11.03□□□□□ -0.64
VIM-208ENST00000497849 PDE6HQ13956 83 aa11.03□□□□□ -0.64
VIM-208ENST00000497849 SUN5Q8TC36 379 aa11.03□□□□□ -0.64
VIM-208ENST00000497849 GSN-AS1Q9NRJ2 163 aa11.03□□□□□ -0.64
VIM-208ENST00000497849 VAX2Q9UIW0 290 aa11.03□□□□□ -0.64
VIM-208ENST00000497849 TRAV12-3A0A0B4J271 114 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 J3KRW8 73 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 ATP6V1G1O75348 118 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 KRTAP10-4P60372 401 aaPredicted RBP11.02□□□□□ -0.65
VIM-208ENST00000497849 SRSF3P84103 164 aaKnown RBP11.02□□□□□ -0.65
VIM-208ENST00000497849 ERCC8Q13216 396 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 Q6ZSA8 131 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 Q8N814 137 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 PYGO2Q9BRQ0 406 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 SMDT1Q9H4I9 107 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 AAMDCQ9H7C9 122 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 ARL2-SNX15V9GYD0 113 aa11.02□□□□□ -0.65
VIM-208ENST00000497849 TRGV1A0A0A0MS02 117 aa11.01□□□□□ -0.65
VIM-208ENST00000497849 EVI2AP22794 236 aa11.01□□□□□ -0.65
VIM-208ENST00000497849 GNG5P63218 68 aa11.01□□□□□ -0.65
VIM-208ENST00000497849 CST9LP1Q5W188 147 aa11.01□□□□□ -0.65
VIM-208ENST00000497849 OTORQ9NRC9 128 aa11.01□□□□□ -0.65
VIM-208ENST00000497849 RPH3ALQ9UNE2 315 aa11.01□□□□□ -0.65
VIM-208ENST00000497849 IGKV2-40A0A087WW87 121 aaPredicted RBP11□□□□□ -0.65
VIM-208ENST00000497849 FAM74A7A6NL05 159 aa11□□□□□ -0.65
VIM-208ENST00000497849 IGKV2D-40P01614 121 aaPredicted RBP11□□□□□ -0.65
VIM-208ENST00000497849 IGHV3-53P01767 116 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms