RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 GFI1BQ5VTD9 330 aa7.1□□□□□ -1.27
USP54-214ENST00000492357 LINC00322Q6ZN03 302 aaPredicted RBP7.1□□□□□ -1.27
USP54-214ENST00000492357 Q8N1Y9 231 aa7.1□□□□□ -1.27
USP54-214ENST00000492357 CNFNQ9BYD5 112 aa7.1□□□□□ -1.27
USP54-214ENST00000492357 SELENOKQ9Y6D0 94 aa7.1□□□□□ -1.27
USP54-214ENST00000492357 CRXO43186 299 aaPredicted RBP7.09□□□□□ -1.27
USP54-214ENST00000492357 ORM1P02763 201 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 IGLC6P0CF74 106 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 RNASE4P34096 147 aaKnown RBP7.09□□□□□ -1.27
USP54-214ENST00000492357 CTRLP40313 264 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 BTN1A1Q13410 526 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 ELOBQ15370 118 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 SPINK13Q1W4C9 94 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 ANXA2RQ3ZCQ2 193 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 PRR9Q5T870 116 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 PTH2Q96A98 100 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 BORCS7Q96B45 105 aa7.09□□□□□ -1.27
USP54-214ENST00000492357 SSBP4Q9BWG4 385 aaPredicted RBP7.09□□□□□ -1.27
USP54-214ENST00000492357 VWFP04275 2813 aa7.09□□□□□ -1.28
USP54-214ENST00000492357 IGHV1OR15-1A0A075B7D0 117 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 LOC102724200A0A096LPH7 203 aaPredicted RBP7.08□□□□□ -1.28
USP54-214ENST00000492357 RBMY1BA6NDE4 496 aaKnown RBP7.08□□□□□ -1.28
USP54-214ENST00000492357 RBMY1EA6NEQ0 496 aaKnown RBP7.08□□□□□ -1.28
USP54-214ENST00000492357 SNAI2O43623 268 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 MT-ND6P03923 174 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 RBMY1DP0C7P1 496 aaKnown RBP7.08□□□□□ -1.28
USP54-214ENST00000492357 FAM3BP58499 235 aaPredicted RBP7.08□□□□□ -1.28
USP54-214ENST00000492357 DEFB1P60022 68 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 CACNG7P62955 275 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 ZNF493Q6ZR52 646 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 YPEL4Q96NS1 127 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 NEU1Q99519 415 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 CSTL1Q9H114 145 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 SRD5A3Q9H8P0 318 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 GOLT1BQ9Y3E0 138 aa7.08□□□□□ -1.28
USP54-214ENST00000492357 IGHV4-4A0A075B6R2 117 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 TRAV12-3A0A0B4J271 114 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 IGKV3D-20A0A0C4DH25 116 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 SMIM9A6NGZ8 99 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 HIGD1CA8MV81 97 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 M0R2Z0 102 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 ASIPP42127 132 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 CBLN2Q8IUK8 224 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 DEFB125Q8N687 156 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 FRZBQ92765 325 aa7.07□□□□□ -1.28
USP54-214ENST00000492357 A0A1B0GUT8 65 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 IGKV3-20P01619 116 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 RIGQ13278 110 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 ZNF124Q15973 351 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 TMEM88Q6PEY1 159 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 ZNF705AQ6ZN79 300 aaPredicted RBP7.06□□□□□ -1.28
USP54-214ENST00000492357 Q6ZWC4 215 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 FER1L6-AS1Q8NA97 138 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 GATD1Q8NB37 220 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 NUP35Q8NFH5 326 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 FAM210BQ96KR6 192 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 SPXQ9BT56 116 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 SCRT2Q9NQ03 307 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 C11orf21Q9P2W6 132 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 TP53TG1Q9Y2A0 90 aa7.06□□□□□ -1.28
USP54-214ENST00000492357 NOTCH3Q9UM47 2321 aa7.05□□□□□ -1.28
USP54-214ENST00000492357 COLCA2A8K830 154 aa7.05□□□□□ -1.28
USP54-214ENST00000492357 NXPH4O95158 308 aa7.05□□□□□ -1.28
USP54-214ENST00000492357 HLA-DQA1P01909 254 aa7.05□□□□□ -1.28
USP54-214ENST00000492357 S100A4P26447 101 aaKnown RBP7.05□□□□□ -1.28
USP54-214ENST00000492357 CSNK1G2-AS1Q8NCQ2 148 aa7.05□□□□□ -1.28
USP54-214ENST00000492357 GTSF1Q8WW33 167 aa7.05□□□□□ -1.28
USP54-214ENST00000492357 GNB1LQ9BYB4 327 aa7.05□□□□□ -1.28
USP54-214ENST00000492357 AGRNO00468 2067 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 TRAV12-2A0A075B6T6 113 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 A0A1B0GXF2 115 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 CA1P00915 261 aaPredicted RBP7.04□□□□□ -1.28
USP54-214ENST00000492357 GIG44P09565 113 aaPredicted RBP7.04□□□□□ -1.28
USP54-214ENST00000492357 IGHV4-30-4P0DP06 118 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 HBBP68871 147 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 ZNF415Q09FC8 603 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 ZNF575Q86XF7 245 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 TMEM263Q8WUH6 116 aaKnown RBP7.04□□□□□ -1.28
USP54-214ENST00000492357 C9orf85Q96MD7 179 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 TMEM208Q9BTX3 173 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 XCL2Q9UBD3 114 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 ANK2Q01484 3957 aa7.04□□□□□ -1.28
USP54-214ENST00000492357 IGHV3-16A0A0C4DH30 117 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 CIDEAO60543 219 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 ARMS2P0C7Q2 107 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 TRGC1P0CF51 173 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 RAB5AP20339 215 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 KRTAP10-11P60412 298 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 KIR3DS1Q14943 382 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 LYZL1Q6UWQ5 148 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 SMIM15Q7Z3B0 74 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 ZFP82Q8N141 532 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 C1orf158Q8N1D5 194 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 SYT8Q8NBV8 401 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 C16orf74Q96GX8 76 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 LINC01587Q99440 93 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 WFDC10AQ9H1F0 79 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 PHLDA3Q9Y5J5 127 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 URGCP-MRPS24S4R325 110 aa7.03□□□□□ -1.28
USP54-214ENST00000492357 CBY3A6NI87 242 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms