RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 G3V4G9 280 aa11.8□□□□□ -0.52
SYNE1-227ENST00000489156 FRMD6-AS1P0C7T7 363 aa11.8□□□□□ -0.52
SYNE1-227ENST00000489156 OR2K2Q8NGT1 345 aa11.8□□□□□ -0.52
SYNE1-227ENST00000489156 BORCS7Q96B45 105 aa11.8□□□□□ -0.52
SYNE1-227ENST00000489156 MRPL18Q9H0U6 180 aaKnown RBP11.8□□□□□ -0.52
SYNE1-227ENST00000489156 LEPP41159 167 aa11.79□□□□□ -0.52
SYNE1-227ENST00000489156 NOTCH1P46531 2555 aa11.79□□□□□ -0.52
SYNE1-227ENST00000489156 DEFB131AP59861 70 aa11.79□□□□□ -0.52
SYNE1-227ENST00000489156 ZNF575Q86XF7 245 aa11.79□□□□□ -0.52
SYNE1-227ENST00000489156 IGKV3D-20A0A0C4DH25 116 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 C5orf52A6NGY3 159 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 WIPF1O43516 503 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 S100A8P05109 93 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 IGLC6P0CF74 106 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 TSPOP30536 169 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 RAB4BP61018 213 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 RIGQ13278 110 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 PRR9Q5T870 116 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 TMSB15BA0A087X1C1 80 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 F2Z2F3 143 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 CTRLP40313 264 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 CMC4P56277 68 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-227ENST00000489156 FER1L6-AS1Q8NA97 138 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 C11orf21Q9P2W6 132 aa11.78□□□□□ -0.52
SYNE1-227ENST00000489156 A8MTW9 85 aa11.77□□□□□ -0.53
SYNE1-227ENST00000489156 HLA-DRB4P13762 266 aa11.77□□□□□ -0.53
SYNE1-227ENST00000489156 RNASE4P34096 147 aaKnown RBP11.77□□□□□ -0.53
SYNE1-227ENST00000489156 SAMD5Q5TGI4 173 aa11.77□□□□□ -0.53
SYNE1-227ENST00000489156 LYZL1Q6UWQ5 148 aa11.77□□□□□ -0.53
SYNE1-227ENST00000489156 MAP6D1Q9H9H5 199 aa11.77□□□□□ -0.53
SYNE1-227ENST00000489156 HLA-DRB4X5D2U9 266 aa11.77□□□□□ -0.53
SYNE1-227ENST00000489156 NBEAL1Q6ZS30 2694 aa11.77□□□□□ -0.53
SYNE1-227ENST00000489156 CDKN1BP46527 198 aa11.76□□□□□ -0.53
SYNE1-227ENST00000489156 CAMPP49913 170 aa11.76□□□□□ -0.53
SYNE1-227ENST00000489156 SNRPEP62304 92 aaKnown RBP11.76□□□□□ -0.53
SYNE1-227ENST00000489156 CNFNQ9BYD5 112 aa11.76□□□□□ -0.53
SYNE1-227ENST00000489156 H3BMM0 161 aa11.76□□□□□ -0.53
SYNE1-227ENST00000489156 APCSP02743 223 aa11.76□□□□□ -0.53
SYNE1-227ENST00000489156 ARMS2P0C7Q2 107 aa11.76□□□□□ -0.53
SYNE1-227ENST00000489156 NDUFA6P56556 154 aa11.76□□□□□ -0.53
SYNE1-227ENST00000489156 CLUHP3Q96NS8 147 aa11.76□□□□□ -0.53
SYNE1-227ENST00000489156 J3KRW8 73 aa11.75□□□□□ -0.53
SYNE1-227ENST00000489156 AMTNQ6UX39 209 aa11.75□□□□□ -0.53
SYNE1-227ENST00000489156 GATD1Q8NB37 220 aa11.75□□□□□ -0.53
SYNE1-227ENST00000489156 FAM110AQ9BQ89 295 aa11.75□□□□□ -0.53
SYNE1-227ENST00000489156 TPPP3Q9BW30 176 aa11.75□□□□□ -0.53
SYNE1-227ENST00000489156 C7orf71A4D174 169 aa11.74□□□□□ -0.53
SYNE1-227ENST00000489156 UBE2CO00762 179 aa11.74□□□□□ -0.53
SYNE1-227ENST00000489156 COA6Q5JTJ3 125 aaKnown RBP11.74□□□□□ -0.53
SYNE1-227ENST00000489156 SSBP4Q9BWG4 385 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-227ENST00000489156 ZNF324O75467 553 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-227ENST00000489156 OR5AL1P0C617 328 aa11.74□□□□□ -0.53
SYNE1-227ENST00000489156 KRTAP10-11P60412 298 aa11.74□□□□□ -0.53
SYNE1-227ENST00000489156 KIR3DS1Q14943 382 aa11.74□□□□□ -0.53
SYNE1-227ENST00000489156 GRIFINA4D1Z8 144 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 KNCNA6PVL3 124 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 HOXA5P20719 270 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 EGFEM1PQ0D2K5 195 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 SLAQ13239 276 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 ODF3L2Q3SX64 289 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 DNLZQ5SXM8 178 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 Q6ZQT7 251 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 ZNF493Q6ZR52 646 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 KCNS1Q96KK3 526 aa11.73□□□□□ -0.53
SYNE1-227ENST00000489156 IGKV3-20P01619 116 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 TDRG1Q3Y452 100 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 AGRNO00468 2067 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 OR11H12B2RN74 326 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 SNAI2O43623 268 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 MED14OSP0DP75 135 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 BEAN1Q3B7T3 259 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 ANXA2RQ3ZCQ2 193 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 GFI1BQ5VTD9 330 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 FAM159AQ6UWV7 190 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 NAGKQ9UJ70 344 aa11.72□□□□□ -0.53
SYNE1-227ENST00000489156 M0R2Z0 102 aa11.71□□□□□ -0.53
SYNE1-227ENST00000489156 CD7P09564 240 aa11.71□□□□□ -0.53
SYNE1-227ENST00000489156 NTF3P20783 257 aa11.71□□□□□ -0.53
SYNE1-227ENST00000489156 SPINK13Q1W4C9 94 aa11.71□□□□□ -0.53
SYNE1-227ENST00000489156 IGHV4-4A0A075B6R2 117 aa11.7□□□□□ -0.54
SYNE1-227ENST00000489156 TRAV12-3A0A0B4J271 114 aa11.7□□□□□ -0.54
SYNE1-227ENST00000489156 ASIPP42127 132 aa11.7□□□□□ -0.54
SYNE1-227ENST00000489156 Q0VG73 95 aa11.7□□□□□ -0.54
SYNE1-227ENST00000489156 CACNG7P62955 275 aa11.7□□□□□ -0.54
SYNE1-227ENST00000489156 TWIST1Q15672 202 aa11.7□□□□□ -0.54
SYNE1-227ENST00000489156 OR10J3Q5JRS4 329 aa11.7□□□□□ -0.54
SYNE1-227ENST00000489156 ZNF124Q15973 351 aa11.69□□□□□ -0.54
SYNE1-227ENST00000489156 KIAA1644Q3SXP7 199 aa11.69□□□□□ -0.54
SYNE1-227ENST00000489156 MUC21Q5SSG8 566 aa11.69□□□□□ -0.54
SYNE1-227ENST00000489156 ZMAT5Q9UDW3 170 aaKnown RBP11.69□□□□□ -0.54
SYNE1-227ENST00000489156 TRAV12-2A0A075B6T6 113 aa11.68□□□□□ -0.54
SYNE1-227ENST00000489156 LOC102724200A0A096LPH7 203 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-227ENST00000489156 S100A4P26447 101 aaKnown RBP11.68□□□□□ -0.54
SYNE1-227ENST00000489156 SRIP30626 198 aa11.68□□□□□ -0.54
SYNE1-227ENST00000489156 STHQ8IWL8 128 aa11.68□□□□□ -0.54
SYNE1-227ENST00000489156 TMEM191AQ9H0A3 160 aa11.68□□□□□ -0.54
SYNE1-227ENST00000489156 AMBPP02760 352 aa11.68□□□□□ -0.54
SYNE1-227ENST00000489156 PRB2P02812 416 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-227ENST00000489156 KPRPQ5T749 579 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-227ENST00000489156 GTSCR1Q86UQ5 136 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms