RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 USP54Q70EL1 1684 aa0.83□□□□□ -2.28
RFC4-213ENST00000489028 ROS1P08922 2347 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 E9PCH4 1651 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 TRAV2A0A0B4J234 112 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 A0A0G2JMM0 328 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 NUPR2A6NF83 97 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 TPST1O60507 370 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 COX4I1P13073 169 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 POLR2JP52435 117 aaKnown RBP0.82□□□□□ -2.28
RFC4-213ENST00000489028 RPL37AP61513 92 aaKnown RBP0.82□□□□□ -2.28
RFC4-213ENST00000489028 CLLU1Q5K131 121 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 UNQ5815/PRO19632Q6UWF5 114 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 Q6ZQY7 126 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 DMAC1Q96GE9 116 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 PFDN5Q99471 154 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 VPS25Q9BRG1 176 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 TAS2R8Q9NYW2 309 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 MRPL36Q9P0J6 103 aaKnown RBP0.82□□□□□ -2.28
RFC4-213ENST00000489028 PAIP2BQ9ULR5 123 aaKnown RBP0.82□□□□□ -2.28
RFC4-213ENST00000489028 MUC16Q8WXI7 14507 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 TET1Q8NFU7 2136 aa0.82□□□□□ -2.28
RFC4-213ENST00000489028 CASP8AP2Q9UKL3 1982 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 CEP152O94986 1710 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 TRBV30A0A0K0K1B3 111 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 HIGD1CA8MV81 97 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 NCR2O95944 276 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 IGF2P01344 180 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 TSPAN19P0C672 248 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 IGLC6P0CF74 106 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 LYPD5Q6UWN5 251 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 ATP11AUNQ6ZP68 121 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 SLC25A26Q70HW3 274 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 CTAGE3PQ8IX95 158 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 ATP6V0E2Q8NHE4 81 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 PPDPFLQ8WWR9 84 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 TCEAL4Q96EI5 215 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 ATG5Q9H1Y0 275 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 SAR1AQ9NR31 198 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 MRPL35Q9NZE8 188 aaKnown RBP0.81□□□□□ -2.28
RFC4-213ENST00000489028 NOP16Q9Y3C1 178 aaKnown RBP0.81□□□□□ -2.28
RFC4-213ENST00000489028 PTPRGP23470 1445 aa0.81□□□□□ -2.28
RFC4-213ENST00000489028 ZGRF1Q86YA3 2104 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 UHRF1BP1LA0JNW5 1464 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 M0R2P5 195 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 IGKCP01834 107 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 HMGN1P05114 100 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 IL7P13232 177 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 CCDC58Q4VC31 144 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 GLYATL3Q5SZD4 288 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 XAF1Q6GPH4 301 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 SNX29P2Q8IUI4 249 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 ATOH7Q8N100 152 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 Q8N6K4 173 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 TSTD1Q8NFU3 115 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 KIAA1549LQ6ZVL6 1849 aa0.8□□□□□ -2.28
RFC4-213ENST00000489028 KDM5CP41229 1560 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 PHRF1Q9P1Y6 1649 aaKnown RBP0.79□□□□□ -2.28
RFC4-213ENST00000489028 TRBV20-1A0A075B6N2 111 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 J3QLW9 94 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 K7ERU9 68 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 CAV3P56539 151 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 IQCJQ1A5X6 159 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 Q6ZS92 163 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 DYNLRB2Q8TF09 96 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 CCL19Q99731 98 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 LSM2Q9Y333 95 aaKnown RBP0.79□□□□□ -2.28
RFC4-213ENST00000489028 CNTRLQ7Z7A1 2325 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 CCDC171Q6TFL3 1326 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 NINQ8N4C6 2090 aa0.79□□□□□ -2.28
RFC4-213ENST00000489028 WDR97A6NE52 1622 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 PTPRDP23468 1912 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 TRAV17A0A0B4J275 112 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 TRBV10-1A0A0K0K1A3 114 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 APOC1P02654 83 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 LINC00694P0DN24 101 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 SARNPP82979 210 aaKnown RBP0.78□□□□□ -2.28
RFC4-213ENST00000489028 DEFB132Q7Z7B7 95 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 Q86TA4 180 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 TPT1P8Q9HAU6 139 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 SOGA1O94964 1423 aa0.78□□□□□ -2.28
RFC4-213ENST00000489028 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.78□□□□□ -2.29
RFC4-213ENST00000489028 FANCMQ8IYD8 2048 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 AHNAK2Q8IVF2 5795 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 FAM236AA0A1B0GUQ0 79 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 FAM236BA0A1B0GV22 79 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 CCDC179H3BU77 68 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 CCKP06307 115 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 FXYD6P3P58550 94 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 COPZ1P61923 177 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 PRG4Q92954 1404 aaPredicted RBP0.77□□□□□ -2.29
RFC4-213ENST00000489028 SYNJ1O43426 1573 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 ANK1P16157 1881 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 MYH1P12882 1939 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 SPAG17Q6Q759 2223 aa0.77□□□□□ -2.29
RFC4-213ENST00000489028 EML5Q05BV3 1969 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 KIDINS220Q9ULH0 1771 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 LOC101927531A0A1B0GV80 90 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 NPFFO15130 113 aa0.76□□□□□ -2.29
RFC4-213ENST00000489028 RPS25P62851 125 aaKnown RBP0.76□□□□□ -2.29
RFC4-213ENST00000489028 FXYD3Q14802 87 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms