RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TNFP01375 233 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 RBP4P02753 201 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 TRGC2P03986 189 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 HLA-DQB2P05538 268 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 GPX1P07203 203 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 SFTA3P0C7M3 94 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 FGF6P10767 208 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 SPTBP11277 2137 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 SLC25A4P12235 298 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 CTSEP14091 401 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 GADD45AP24522 165 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 PSMB8P28062 276 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 ZNF93P35789 620 aaPredicted RBP0.66□□□□□ -2.3
SMC4-220ENST00000488017 LPAR6P43657 344 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 ATP5G3P48201 142 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 MARCKSL1P49006 195 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 HINT1P49773 126 aaPredicted RBP0.66□□□□□ -2.3
SMC4-220ENST00000488017 DEFA3P59666 94 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 LCN6P62502 163 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 RPS24P62847 133 aaKnown RBP0.66□□□□□ -2.3
SMC4-220ENST00000488017 HERVK_113P63121 156 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 ESPL1Q14674 2120 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 RHEBQ15382 184 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 SPA17Q15506 151 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 CLEC12BQ2HXU8 276 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 C12orf74Q32Q52 190 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 MEIG1Q5JSS6 88 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 FAM201AQ5SY85 155 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 LGALS9CQ6DKI2 356 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 OR2T2Q6IF00 324 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 C2orf91Q6ZV80 131 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 SPATA12Q7Z6I5 190 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 TRAPPC6BQ86SZ2 158 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 RPS19BP1Q86WX3 136 aaKnown RBP0.66□□□□□ -2.3
SMC4-220ENST00000488017 PRR15Q8IV56 129 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 C1orf174Q8IYL3 243 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 Q8N2B8 174 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 SLC22A24Q8N4F4 322 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 KCNRGQ8N5I3 272 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 TET1Q8NFU7 2136 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 OR52R1Q8NGF1 315 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 OR5A1Q8NGJ0 315 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 OR5D16Q8NGK9 328 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 OR10D3Q8NH80 312 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 DCANP1Q8TF63 244 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 SLAMF6Q96DU3 332 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 BORCS8Q96FH0 119 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 S100A13Q99584 98 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 UPK3BQ9BT76 320 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 CHST6Q9GZX3 395 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 PBOV1Q9GZY1 135 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 ATG5Q9H1Y0 275 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 HES4Q9HCC6 221 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 OTORQ9NRC9 128 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 SPANXA1Q9NS26 97 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 CISHQ9NSE2 258 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 FKBP11Q9NYL4 201 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 UQCR10Q9UDW1 63 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 PSORS1C2Q9UIG4 136 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 CYSLTR1Q9Y271 337 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 COQ4Q9Y3A0 265 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 PCYT1BQ9Y5K3 369 aaPredicted RBP0.66□□□□□ -2.3
SMC4-220ENST00000488017 DNAJC15Q9Y5T4 150 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 MPC1Q9Y5U8 109 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 CD163L1Q9NR16 1453 aa0.66□□□□□ -2.3
SMC4-220ENST00000488017 CR1P17927 2039 aa0.65□□□□□ -2.3
SMC4-220ENST00000488017 COL4A5P29400 1685 aa0.65□□□□□ -2.3
SMC4-220ENST00000488017 MDC1Q14676 2089 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 MALRD1Q5VYJ5 2156 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 MUC4Q99102 2169 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 TRBV20-1A0A075B6N2 111 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 A0A087WWC5 75 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 A0A087X0T9 212 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 A0A0J9YW62 118 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 A0A1W2PPM0 123 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 DAPL1A0PJW8 107 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 GRIFINA4D1Z8 144 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 RBAKDNA6NC62 111 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 TMEM262E9PQX1 116 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 H3BRM9 83 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 M0R2Z0 102 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 PIRO00625 290 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 LYRM1O43325 122 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 KLF7O75840 302 aaPredicted RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 LY6HO94772 140 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 NDUFB6O95139 128 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 NCR2O95944 276 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 TCL1BO95988 128 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 C1QAP02745 245 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 SLC25A5P05141 298 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 DBIP07108 87 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 IL3P08700 152 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 AKAIN1P0CW23 69 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 CRYGAP11844 174 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 HIST1H1DP16402 221 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 CRYBB3P26998 211 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 PPP1CCP36873 323 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 SRP14P37108 136 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 CCR2P41597 374 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 CA7P43166 264 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms