RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 UBE2E1P51965 193 aa9.3□□□□□ -0.92
COL3A1-206ENST00000487010 SUMO2P61956 95 aaKnown RBP9.3□□□□□ -0.92
COL3A1-206ENST00000487010 NEXN-AS1Q8NBZ9 246 aa9.3□□□□□ -0.92
COL3A1-206ENST00000487010 OR11H1Q8NG94 326 aa9.3□□□□□ -0.92
COL3A1-206ENST00000487010 OR11H2Q8NH07 326 aa9.3□□□□□ -0.92
COL3A1-206ENST00000487010 RASL10AQ92737 203 aa9.3□□□□□ -0.92
COL3A1-206ENST00000487010 SIGMAR1Q99720 223 aa9.3□□□□□ -0.92
COL3A1-206ENST00000487010 LENEPQ9Y5L5 61 aa9.3□□□□□ -0.92
COL3A1-206ENST00000487010 DCHS2Q6V1P9 2916 aa9.29□□□□□ -0.92
COL3A1-206ENST00000487010 ABCA4P78363 2273 aa9.29□□□□□ -0.92
COL3A1-206ENST00000487010 J3QR89 54 aa9.29□□□□□ -0.92
COL3A1-206ENST00000487010 IGF1P05019 195 aa9.29□□□□□ -0.92
COL3A1-206ENST00000487010 AZU1P20160 251 aa9.29□□□□□ -0.92
COL3A1-206ENST00000487010 FOXC1Q12948 553 aa9.29□□□□□ -0.92
COL3A1-206ENST00000487010 CD300EQ496F6 205 aaPredicted RBP9.29□□□□□ -0.92
COL3A1-206ENST00000487010 ITLN2Q8WWU7 325 aaPredicted RBP9.29□□□□□ -0.92
COL3A1-206ENST00000487010 C20orf78Q9BR46 151 aa9.29□□□□□ -0.92
COL3A1-206ENST00000487010 KLK15Q9H2R5 256 aa9.29□□□□□ -0.92
COL3A1-206ENST00000487010 TSSC4Q9Y5U2 329 aaPredicted RBP9.29□□□□□ -0.92
COL3A1-206ENST00000487010 CENPVL3A0A0U1RRI6 287 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 SCGB1A1P11684 91 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 GAGE13Q4V321 117 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 AMTNQ6UX39 209 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 C20orf173Q96LM9 149 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 GTSF1LQ9H1H1 148 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 WNK2Q9Y3S1 2297 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 LRBAP50851 2863 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 GAGE12HA6NDE8 117 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 M0R381 172 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 LGALS1P09382 135 aaKnown RBP9.28□□□□□ -0.92
COL3A1-206ENST00000487010 SAA4P35542 130 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 ATP5G2Q06055 141 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 C9orf139Q6ZV77 190 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 SH2D6Q7Z4S9 175 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 GLMPQ8WWB7 406 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 PRO0461Q9UI25 63 aa9.28□□□□□ -0.92
COL3A1-206ENST00000487010 ADORA2A-AS1P86434 159 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 ETDBQ3ZM63 59 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 ZFAND2AQ8N6M9 145 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 BAALCQ8WXS3 180 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 RPL39LQ96EH5 51 aaKnown RBP9.27□□□□□ -0.93
COL3A1-206ENST00000487010 LINC00477Q96M19 166 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 SPAG8Q99932 426 aaPredicted RBP9.27□□□□□ -0.93
COL3A1-206ENST00000487010 DPH3P1Q9H4G8 78 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 CYSLTR1Q9Y271 337 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 RNF223E7ERA6 249 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 J3KRW8 73 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 HOXA3O43365 443 aaPredicted RBP9.27□□□□□ -0.93
COL3A1-206ENST00000487010 SPRY2O43597 315 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 NBL1P41271 181 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 RAXQ9Y2V3 346 aa9.27□□□□□ -0.93
COL3A1-206ENST00000487010 TRAV21A0A0B4J279 112 aa9.26□□□□□ -0.93
COL3A1-206ENST00000487010 MORN3Q6PF18 240 aaPredicted RBP9.26□□□□□ -0.93
COL3A1-206ENST00000487010 C2orf66Q6UXQ4 117 aa9.26□□□□□ -0.93
COL3A1-206ENST00000487010 C14orf178Q8N769 122 aaPredicted RBP9.26□□□□□ -0.93
COL3A1-206ENST00000487010 SPATA25Q9BR10 227 aa9.26□□□□□ -0.93
COL3A1-206ENST00000487010 ANKHD1Q8IWZ3 2542 aaKnown RBP9.26□□□□□ -0.93
COL3A1-206ENST00000487010 CIDEAO60543 219 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 S100A4P26447 101 aaKnown RBP9.25□□□□□ -0.93
COL3A1-206ENST00000487010 ASIPP42127 132 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 SMAGPQ0VAQ4 97 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 C5orf56Q8N8D9 126 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 ATP6V0BQ99437 205 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 PRADC1Q9BSG0 188 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 ZFHX2Q9C0A1 2572 aaPredicted RBP9.25□□□□□ -0.93
COL3A1-206ENST00000487010 PRSS29PA6NIE9 313 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 GPHB5Q86YW7 130 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 MTURNQ8N3F0 131 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 OR10J6PQ8NGY7 276 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 SPOCK3Q9BQ16 436 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 PHLDA3Q9Y5J5 127 aa9.25□□□□□ -0.93
COL3A1-206ENST00000487010 OVOL1O14753 267 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 MGPP08493 103 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 MED14OSP0DP75 135 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 ANXA2RQ3ZCQ2 193 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 GVINP1Q7Z2Y8 2422 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 FAM223BA6NKX1 122 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 ZNF815PA8K554 130 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 SCGB2A2Q13296 93 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 C19orf54Q5BKX5 351 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 FAM223AQ8IWN6 122 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 PGPEP1Q9NXJ5 209 aa9.24□□□□□ -0.93
COL3A1-206ENST00000487010 RIF1Q5UIP0 2472 aaKnown RBP9.23□□□□□ -0.93
COL3A1-206ENST00000487010 TRAV41A0A0B4J266 112 aa9.23□□□□□ -0.93
COL3A1-206ENST00000487010 SOCS3O14543 225 aa9.23□□□□□ -0.93
COL3A1-206ENST00000487010 NPFFO15130 113 aa9.23□□□□□ -0.93
COL3A1-206ENST00000487010 COX6B1P14854 86 aa9.23□□□□□ -0.93
COL3A1-206ENST00000487010 ARL3P36405 182 aa9.23□□□□□ -0.93
COL3A1-206ENST00000487010 FAM19A4Q96LR4 140 aa9.23□□□□□ -0.93
COL3A1-206ENST00000487010 TMEM238LA0A1B0GVL6 79 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 A6NJY4 79 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 PPP1R17O96001 155 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 RNASE4P34096 147 aaKnown RBP9.22□□□□□ -0.93
COL3A1-206ENST00000487010 INSL3P51460 131 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 DEFB1P60022 68 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 UNQ9165/PRO28630Q6UXU0 137 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 LCNL1Q6ZST4 164 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 PLEKHB2Q96CS7 222 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 MRPL16Q9NX20 251 aaKnown RBP9.22□□□□□ -0.93
COL3A1-206ENST00000487010 GNRH2O43555 120 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms