RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 DIAPH2-AS1Q14236 149 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 IGFBP7Q16270 282 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 LGALS9BQ3B8N2 356 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 HSD17B12Q53GQ0 312 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 FAM78AQ5JUQ0 283 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 COL5A1-AS1Q5SY13 56 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 LGALS9CQ6DKI2 356 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 LCN15Q6UWW0 184 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 GTF2H5Q6ZYL4 71 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 LINC00305Q7Z4B0 112 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 C9orf62Q8N4C0 152 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 C3orf22Q8N5N4 141 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 TEX29Q8N6K0 151 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 DAND5Q8N907 189 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 OR5D14Q8NGL3 314 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 OR5H6Q8NGV6 325 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 OR10AC1Q8NH08 325 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 ITLN2Q8WWU7 325 aaPredicted RBP1.69□□□□□ -2.14
VPS41-213ENST00000485955 RNF5Q99942 180 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 TBL1YQ9BQ87 522 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 NAA38Q9BRA0 125 aaKnown RBP1.69□□□□□ -2.14
VPS41-213ENST00000485955 ADAT1Q9BUB4 502 aaKnown RBP1.69□□□□□ -2.14
VPS41-213ENST00000485955 SNHG12Q9BXW3 62 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 TMEM133Q9H2Q1 129 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 RNF11Q9Y3C5 154 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 PHLDA3Q9Y5J5 127 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 ABCA13Q86UQ4 5058 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 DYNC2H1Q8NCM8 4307 aaKnown RBP1.69□□□□□ -2.14
VPS41-213ENST00000485955 F5P12259 2224 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 TENM1Q9UKZ4 2725 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 SEC16AO15027 2179 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 HMCN1Q96RW7 5635 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 IGHV3-43A0A0B4J1X8 118 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 TRAV13-1A0A0B4J241 112 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 A0A0D9SEW6 157 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 FAM236AA0A1B0GUQ0 79 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 FAM236BA0A1B0GV22 79 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 TMEM223A0PJW6 202 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 K7ERS5 55 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 UBFD1O14562 309 aaKnown RBP1.68□□□□□ -2.14
VPS41-213ENST00000485955 CXCL1P09341 107 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 PTHLHP12272 177 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 HIST1H1DP16402 221 aaKnown RBP1.68□□□□□ -2.14
VPS41-213ENST00000485955 SRP14P37108 136 aaKnown RBP1.68□□□□□ -2.14
VPS41-213ENST00000485955 RPL27AP46776 148 aaKnown RBP1.68□□□□□ -2.14
VPS41-213ENST00000485955 CSN1S1P47710 185 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 DYNLT3P51808 116 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 HIST1H4AP62805 103 aaKnown RBP1.68□□□□□ -2.14
VPS41-213ENST00000485955 RPL30P62888 115 aaKnown RBP1.68□□□□□ -2.14
VPS41-213ENST00000485955 MYL5Q02045 173 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 ZNF816Q0VGE8 651 aaPredicted RBP1.68□□□□□ -2.14
VPS41-213ENST00000485955 HES1Q14469 280 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 MRPL51Q4U2R6 128 aaKnown RBP1.68□□□□□ -2.14
VPS41-213ENST00000485955 LINC01554Q52M75 96 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 SPANXN3Q5MJ09 141 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 ZNF678Q5SXM1 525 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 AMN1Q8IY45 258 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 C4orf33Q8N1A6 199 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 PACRGLQ8N7B6 248 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 STAG3L4Q8TBR4 150 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 NAT14Q8WUY8 206 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 SLC25A46Q96AG3 418 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 OR4C12Q96R67 309 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 MRPL57Q9BQC6 102 aaKnown RBP1.68□□□□□ -2.14
VPS41-213ENST00000485955 CHCHD7Q9BUK0 85 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 CCDC167Q9P0B6 97 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 SNX12Q9UMY4 172 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 S4R3C0 116 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 NUP210LQ5VU65 1888 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 PCDH15Q96QU1 1955 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 SACSQ9NZJ4 4579 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 LAMA4Q16363 1823 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 PTPRDP23468 1912 aa1.68□□□□□ -2.14
VPS41-213ENST00000485955 WNK1Q9H4A3 2382 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 CMYA5Q8N3K9 4069 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 ZNF407Q9C0G0 2248 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.67□□□□□ -2.14
VPS41-213ENST00000485955 TRAV27A0A087WT01 109 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 A0A087X0T9 212 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 IGHV3-21A0A0B4J1V1 117 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 A0A0G2JMM0 328 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 A0A1W2PPB8 328 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 C7orf71A4D174 169 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 OR2T8A6NH00 312 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 A8MWP6 167 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 KIR3DP1A8MWS1 328 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 FNDC10F2Z333 226 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 C19orf84I3L1E1 186 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 K7ERJ3 54 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 CDC42EP2O14613 210 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 NDUFB3O43676 98 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 NDUFB2O95178 105 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 OR5AC1P0C628 307 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 CGB3P0DN86 165 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 CGB7P0DN87 165 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 NPPCP23582 126 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 COL8A2P25067 703 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 CRYBB3P26998 211 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 AKR1C2P52895 323 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 AQP4P55087 323 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms