RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZNF182P17025 639 aaPredicted RBP2.95□□□□□ -1.94
USP4-209ENST00000475873 SNCAP37840 140 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 UBE2MP61081 183 aaKnown RBP2.95□□□□□ -1.94
USP4-209ENST00000475873 ZNF90Q03938 601 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 SCGB2B2Q4G0G5 96 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 REG3GQ6UW15 175 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 TEX261Q6UWH6 196 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 SPINK6Q6UWN8 80 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 TMEM91Q6ZNR0 172 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 LINC00299Q6ZSB3 139 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 H2BFWTQ7Z2G1 175 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 OR8I2Q8N0Y5 310 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 C9orf163Q8N9P6 203 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 YIPF6Q96EC8 236 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 MRAP2Q96G30 205 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 CENPNQ96H22 339 aaPredicted RBP2.95□□□□□ -1.94
USP4-209ENST00000475873 C20orf144Q9BQM9 153 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 SSBP4Q9BWG4 385 aaPredicted RBP2.95□□□□□ -1.94
USP4-209ENST00000475873 NKX6-2Q9C056 277 aaPredicted RBP2.95□□□□□ -1.94
USP4-209ENST00000475873 SCN3BQ9NY72 215 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 RAB22AQ9UL26 194 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 ZFP30Q9Y2G7 519 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 TRAV8-3A0A0A6YYJ7 113 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 TGIF2-C20orf24A0A0A6YYL0 155 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 TRAV12-3A0A0B4J271 114 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 MUC21A0A0G2JKD1 596 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 IGSF23A1L1A6 192 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 PRAC2D3DTV9 90 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 H7C1H1 209 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 EI24O14681 340 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 CDS2O95674 445 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 IFNA1P01562 189 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 IGKV1-5P01602 117 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 TYMSP04818 313 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 PRSS1P07477 247 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 CXCL3P19876 107 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 FGF7P21781 194 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 LORP23490 312 aaPredicted RBP2.94□□□□□ -1.94
USP4-209ENST00000475873 PSMB9P28065 219 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 TCL1AP56279 114 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 DEFA1P59665 94 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 DEFA3P59666 94 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 LYZP61626 148 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 BAXQ07812 192 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 OCIAD2Q56VL3 154 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 FFAR4Q5NUL3 377 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 AKR1C8PQ5T2L2 129 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 C22orf42Q6IC83 251 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 STEAP1BQ6NZ63 245 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 TEPPQ6URK8 271 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 Q6ZQT7 251 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 CCDC190Q86UF4 302 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 SLC35G3Q8N808 338 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 PRR26Q8N8Z3 221 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 OR1B1Q8NGR6 318 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 OR13C6PQ8NH95 151 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 ATP6V0E2Q8NHE4 81 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 ACY3Q96HD9 319 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 ENY2Q9NPA8 101 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 PLAC8Q9NZF1 115 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 TP53TG3Q9ULZ0 132 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 POMPQ9Y244 141 aa2.94□□□□□ -1.94
USP4-209ENST00000475873 SYNE2Q8WXH0 6885 aaKnown RBP2.94□□□□□ -1.94
USP4-209ENST00000475873 IGKV1OR2-108A0A075B7D4 117 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 A0A0G2JRQ6 117 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 FAM74A7A6NL05 159 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 HMGB3O15347 200 aaKnown RBP2.93□□□□□ -1.94
USP4-209ENST00000475873 VPREB1P12018 145 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 SLC25A4P12235 298 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 MYL12AP19105 171 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 GADD45AP24522 165 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 HRH1P35367 487 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 OR10A3P58181 314 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 LINC01547P58512 204 aaPredicted RBP2.93□□□□□ -1.94
USP4-209ENST00000475873 SNRPEP62304 92 aaKnown RBP2.93□□□□□ -1.94
USP4-209ENST00000475873 FABP9Q0Z7S8 132 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 FAM74A3Q4VXF1 159 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 OR10J3Q5JRS4 329 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 FAM74A1Q5RGS3 127 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 PRR27Q6MZM9 219 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 TCTE3Q8IZS6 198 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 OR4D5Q8NGN0 318 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 SPACA4Q8TDM5 124 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 ZNF431Q8TF32 576 aaPredicted RBP2.93□□□□□ -1.94
USP4-209ENST00000475873 ORAOV1Q8WV07 137 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 DEDD2Q8WXF8 326 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 TXNDC17Q9BRA2 123 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 PYGO2Q9BRQ0 406 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 SNHG12Q9BXW3 62 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 SLC25A31Q9H0C2 315 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 FXYD6Q9H0Q3 95 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 CDIP1Q9H305 208 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 MED9Q9NWA0 146 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 PSG8Q9UQ74 426 aa2.93□□□□□ -1.94
USP4-209ENST00000475873 MACF1Q9UPN3 7388 aaKnown RBP2.93□□□□□ -1.94
USP4-209ENST00000475873 IGKV2D-24A0A075B6R9 120 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 TRAV8-6A0A0B4J262 113 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 TRGV4A0A0C4DH28 118 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 PRSS46E5RG02 174 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 CT45A10P0DMU9 189 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms