RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 A0A087WWL8 130 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 CCL25O15444 150 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 NDUFC1O43677 76 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 NDUFB1O75438 58 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 MRPL23Q16540 153 aaKnown RBP10.66□□□□□ -0.7
COL6A3-209ENST00000472056 C8orf86Q6ZUL3 223 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 VSIG2Q96IQ7 327 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 A0A1W2PRX2 142 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 TRAV3A0A0B4J244 114 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 A0A1B0GX51 115 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 MBD3L4A6NDZ8 208 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-209ENST00000472056 MBD3L3A6NE82 208 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-209ENST00000472056 MBD3L5A6NJ08 208 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-209ENST00000472056 UBE2E1P51965 193 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 MBD3L2Q8NHZ7 208 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-209ENST00000472056 SAP30O75446 220 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 IGKV1-16P04430 117 aa10.66□□□□□ -0.7
COL6A3-209ENST00000472056 Q6ZRM9 215 aa10.65□□□□□ -0.7
COL6A3-209ENST00000472056 FXYD5Q96DB9 178 aa10.65□□□□□ -0.7
COL6A3-209ENST00000472056 V9GYY9 64 aa10.65□□□□□ -0.7
COL6A3-209ENST00000472056 TEX48A0A1B0GUV7 120 aa10.65□□□□□ -0.7
COL6A3-209ENST00000472056 TMEM256-PLSCR3K7ERE1 68 aa10.65□□□□□ -0.7
COL6A3-209ENST00000472056 CYYR1Q96J86 154 aa10.65□□□□□ -0.7
COL6A3-209ENST00000472056 MUSTN1Q8IVN3 82 aa10.65□□□□□ -0.7
COL6A3-209ENST00000472056 MUC6Q6W4X9 2439 aa10.65□□□□□ -0.7
COL6A3-209ENST00000472056 IGKV1D-17A0A075B6S4 117 aa10.65□□□□□ -0.7
COL6A3-209ENST00000472056 DAZ2Q13117 558 aaKnown RBP10.65□□□□□ -0.7
COL6A3-209ENST00000472056 DAZ4Q86SG3 579 aaKnown RBP10.65□□□□□ -0.7
COL6A3-209ENST00000472056 DAZ3Q9NR90 486 aaKnown RBP10.65□□□□□ -0.7
COL6A3-209ENST00000472056 COL4A1P02462 1669 aa10.65□□□□□ -0.71
COL6A3-209ENST00000472056 FGFBP3Q8TAT2 258 aa10.65□□□□□ -0.71
COL6A3-209ENST00000472056 FAM236AA0A1B0GUQ0 79 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 FAM236BA0A1B0GV22 79 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 PROP1O75360 226 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 PIFOQ8TCI5 191 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 HIVEP2P31629 2446 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 C5orf63A6NC05 138 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 ICOSQ9Y6W8 199 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 C22orf46C9J442 243 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 TFF2Q03403 129 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 SLX1AQ9BQ83 275 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 CXCL5P42830 114 aa10.64□□□□□ -0.71
COL6A3-209ENST00000472056 PSMB8P28062 276 aa10.63□□□□□ -0.71
COL6A3-209ENST00000472056 IGHV3OR16-10A0A075B7F0 116 aa10.63□□□□□ -0.71
COL6A3-209ENST00000472056 C14orf132Q9NPU4 83 aa10.63□□□□□ -0.71
COL6A3-209ENST00000472056 VOPP1Q96AW1 172 aa10.63□□□□□ -0.71
COL6A3-209ENST00000472056 ZC2HC1AQ96GY0 325 aa10.63□□□□□ -0.71
COL6A3-209ENST00000472056 CSRP1P21291 193 aaKnown RBP10.63□□□□□ -0.71
COL6A3-209ENST00000472056 LINC01620Q4KN68 170 aa10.63□□□□□ -0.71
COL6A3-209ENST00000472056 HIVEP3Q5T1R4 2406 aa10.63□□□□□ -0.71
COL6A3-209ENST00000472056 IGLC1P0CG04 106 aa10.62□□□□□ -0.71
COL6A3-209ENST00000472056 LINC00479Q96M42 142 aa10.62□□□□□ -0.71
COL6A3-209ENST00000472056 TMEM213A2RRL7 107 aa10.62□□□□□ -0.71
COL6A3-209ENST00000472056 UQCRQO14949 82 aa10.62□□□□□ -0.71
COL6A3-209ENST00000472056 OPRPNQ99935 248 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-209ENST00000472056 FOXI1Q12951 378 aa10.62□□□□□ -0.71
COL6A3-209ENST00000472056 CR1LQ2VPA4 569 aa10.62□□□□□ -0.71
COL6A3-209ENST00000472056 C17orf82Q86X59 251 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-209ENST00000472056 NTN5Q8WTR8 489 aaPredicted RBP10.62□□□□□ -0.71
COL6A3-209ENST00000472056 C10orf55Q5SWW7 151 aa10.62□□□□□ -0.71
COL6A3-209ENST00000472056 A0A087WV48 116 aa10.62□□□□□ -0.71
COL6A3-209ENST00000472056 PFN2P35080 140 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 Q8NFD4 153 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 K7ERJ3 54 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 FXYD7P58549 80 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 LINC01356Q8N9X3 169 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 UBE2BP63146 152 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 IMUPQ9GZP8 106 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 LINC00643Q86TS7 51 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 ZFYVE26Q68DK2 2539 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 IGLL5B9A064 214 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 ZFP2Q6ZN57 461 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 J3QLI3 93 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 C8orf49Q96NF6 230 aa10.61□□□□□ -0.71
COL6A3-209ENST00000472056 TEX36Q5VZQ5 186 aa10.6□□□□□ -0.71
COL6A3-209ENST00000472056 A0A0G2JRQ6 117 aa10.6□□□□□ -0.71
COL6A3-209ENST00000472056 KLHL30-AS1Q8NEE0 82 aa10.6□□□□□ -0.71
COL6A3-209ENST00000472056 TINCRA0A1B0GVN0 87 aa10.6□□□□□ -0.71
COL6A3-209ENST00000472056 PRR15LQ9BU68 103 aa10.6□□□□□ -0.71
COL6A3-209ENST00000472056 SAA4P35542 130 aa10.6□□□□□ -0.71
COL6A3-209ENST00000472056 H3BUX3 64 aa10.59□□□□□ -0.71
COL6A3-209ENST00000472056 LHBP01229 141 aa10.59□□□□□ -0.71
COL6A3-209ENST00000472056 CD59P13987 128 aa10.59□□□□□ -0.71
COL6A3-209ENST00000472056 NDPQ00604 133 aa10.59□□□□□ -0.71
COL6A3-209ENST00000472056 MED14OSP0DP75 135 aa10.59□□□□□ -0.71
COL6A3-209ENST00000472056 KAAG1Q9UBP8 84 aa10.59□□□□□ -0.71
COL6A3-209ENST00000472056 COL5A1P20908 1838 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-209ENST00000472056 PRSS29PA6NIE9 313 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 SPATA12Q7Z6I5 190 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 UBE2E2Q96LR5 201 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 LRRK2Q5S007 2527 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 ZNF726P1Q15940 193 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 TRBV10-2A0A0K0K1G8 114 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 EFNA2O43921 213 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 HIGD2BQ4VC39 106 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 LTBRP36941 435 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 FOXE3Q13461 319 aa10.58□□□□□ -0.72
COL6A3-209ENST00000472056 A0A1B0GUS0 222 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 DAD1P61803 113 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 MCRIP2Q9BUT9 160 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms