RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 LENEPQ9Y5L5 61 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 ATXN8Q156A1 80 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 XCL2Q9UBD3 114 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 TMEM86BQ8N661 226 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 MYMXA0A1B0GTQ4 84 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 F8VRH5 84 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 KLF12Q9Y4X4 402 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 TRAV13-1A0A0B4J241 112 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 I3L3M4 83 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 C20orf78Q9BR46 151 aa11.56□□□□□ -0.56
PTPRU-205ENST00000460170 C9orf118A6NHY6 69 aa11.55□□□□□ -0.56
PTPRU-205ENST00000460170 PRO3102Q9H379 93 aa11.55□□□□□ -0.56
PTPRU-205ENST00000460170 A0A087WX48 190 aa11.55□□□□□ -0.56
PTPRU-205ENST00000460170 FOXE3Q13461 319 aa11.55□□□□□ -0.56
PTPRU-205ENST00000460170 CFHR4Q92496 578 aa11.55□□□□□ -0.56
PTPRU-205ENST00000460170 BVES-AS1Q5T3Y7 98 aa11.55□□□□□ -0.56
PTPRU-205ENST00000460170 NEGR1Q7Z3B1 354 aa11.55□□□□□ -0.56
PTPRU-205ENST00000460170 HLA-DRB4P13762 266 aa11.54□□□□□ -0.56
PTPRU-205ENST00000460170 DKK2Q9UBU2 259 aa11.54□□□□□ -0.56
PTPRU-205ENST00000460170 HLA-DRB4X5D2U9 266 aa11.54□□□□□ -0.56
PTPRU-205ENST00000460170 WDR87Q6ZQQ6 2873 aa11.54□□□□□ -0.56
PTPRU-205ENST00000460170 ELANEP08246 267 aa11.54□□□□□ -0.56
PTPRU-205ENST00000460170 F6UB75 175 aa11.54□□□□□ -0.56
PTPRU-205ENST00000460170 TRAV8-4A0A0B4J246 113 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 ADORA2A-AS1P86434 159 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 Q8N9W7 124 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 LINC00574Q9H8X3 128 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 CRYGCP07315 174 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 GAGE1Q13065 139 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 ADAMTSL5Q6ZMM2 481 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 PRIMA1Q86XR5 153 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 GTSF1Q8WW33 167 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 CST9LQ9H4G1 147 aa11.53□□□□□ -0.56
PTPRU-205ENST00000460170 IGHV4-61A0A0C4DH41 118 aa11.52□□□□□ -0.56
PTPRU-205ENST00000460170 TDRG1Q3Y452 100 aa11.52□□□□□ -0.56
PTPRU-205ENST00000460170 Q8N7P7 452 aa11.52□□□□□ -0.56
PTPRU-205ENST00000460170 BUB3O43684 328 aa11.52□□□□□ -0.57
PTPRU-205ENST00000460170 Q96MF0 132 aa11.52□□□□□ -0.57
PTPRU-205ENST00000460170 DYSFO75923 2080 aa11.52□□□□□ -0.57
PTPRU-205ENST00000460170 WI2-2373I1.2A0A1W2PRP0 233 aa11.52□□□□□ -0.57
PTPRU-205ENST00000460170 Q8NA96 180 aa11.52□□□□□ -0.57
PTPRU-205ENST00000460170 UTF1Q5T230 341 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 ATP6V0BQ99437 205 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 FRMD6-AS1P0C7T7 363 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 PLA2G5P39877 138 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 OCIAD2Q56VL3 154 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 ZNF503Q96F45 646 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 SIVA1O15304 175 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 PAX4O43316 350 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 CRPP02741 224 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 IGHV3-16A0A0C4DH30 117 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 GNRH2O43555 120 aa11.51□□□□□ -0.57
PTPRU-205ENST00000460170 EIF4EBP1Q13541 118 aaPredicted RBP11.51□□□□□ -0.57
PTPRU-205ENST00000460170 DEFB112Q30KQ8 113 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 GTSF1LQ9H1H1 148 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 IGHV4-59P01825 116 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 GATA1P15976 413 aaPredicted RBP11.5□□□□□ -0.57
PTPRU-205ENST00000460170 FBXL19-AS1Q494R0 122 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 C2orf82Q6UX34 121 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 ZNF493Q6ZR52 646 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 CSPG4Q6UVK1 2322 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 LINC00173Q6ZV60 143 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 NUP210LQ5VU65 1888 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 SLC25A20O43772 301 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 C6orf226Q5I0X4 101 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 MSRB1Q9NZV6 116 aa11.5□□□□□ -0.57
PTPRU-205ENST00000460170 IGKV1D-37A0A075B6S9 117 aa11.49□□□□□ -0.57
PTPRU-205ENST00000460170 DEFB130BP0DP73 79 aa11.49□□□□□ -0.57
PTPRU-205ENST00000460170 DEFB130AP0DP74 79 aa11.49□□□□□ -0.57
PTPRU-205ENST00000460170 SRSF2Q01130 221 aaKnown RBP11.49□□□□□ -0.57
PTPRU-205ENST00000460170 NOTCH2Q04721 2471 aa11.49□□□□□ -0.57
PTPRU-205ENST00000460170 GHRHP01286 108 aa11.49□□□□□ -0.57
PTPRU-205ENST00000460170 C11orf68Q9H3H3 251 aaKnown RBP11.49□□□□□ -0.57
PTPRU-205ENST00000460170 GAGE12JA6NER3 117 aa11.48□□□□□ -0.57
PTPRU-205ENST00000460170 K7EMI3 77 aa11.48□□□□□ -0.57
PTPRU-205ENST00000460170 IGHV4-38-2P0DP08 117 aa11.48□□□□□ -0.57
PTPRU-205ENST00000460170 ZFP36P26651 326 aaKnown RBP11.48□□□□□ -0.57
PTPRU-205ENST00000460170 GAGE4Q13068 117 aa11.48□□□□□ -0.57
PTPRU-205ENST00000460170 GAGE5Q13069 117 aa11.48□□□□□ -0.57
PTPRU-205ENST00000460170 TAL2Q16559 108 aa11.48□□□□□ -0.57
PTPRU-205ENST00000460170 RNF114Q9Y508 228 aa11.48□□□□□ -0.57
PTPRU-205ENST00000460170 BLCAPP62952 87 aa11.48□□□□□ -0.57
PTPRU-205ENST00000460170 C1orf229Q6ZS94 237 aaPredicted RBP11.48□□□□□ -0.57
PTPRU-205ENST00000460170 C9JAW5 83 aa11.48□□□□□ -0.57
PTPRU-205ENST00000460170 VPREB3Q9UKI3 123 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 K7EP34 96 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 AZU1P20160 251 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 GAGE2BQ13066 116 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 GAGE2EQ4V326 116 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 LINC01545Q5VT33 79 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 C22orf34Q6ZV56 151 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 GAGE2DQ9UEU5 116 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 LEPROTO15243 131 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 CEND1Q8N111 149 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 C5orf56Q8N8D9 126 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 ZNF625Q96I27 306 aaPredicted RBP11.47□□□□□ -0.57
PTPRU-205ENST00000460170 FOXI2Q6ZQN5 318 aa11.47□□□□□ -0.57
PTPRU-205ENST00000460170 IGHV4-30-2A0A087WSY4 118 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 PRSS29PA6NIE9 313 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 SPRY2O43597 315 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms