RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 AKAP13Q12802 2813 aa9.19□□□□□ -0.94
MSH6-204ENST00000445503 A0A1B0GWB2 263 aa9.19□□□□□ -0.94
MSH6-204ENST00000445503 BUB3O43684 328 aa9.19□□□□□ -0.94
MSH6-204ENST00000445503 GTSF1LQ9H1H1 148 aa9.19□□□□□ -0.94
MSH6-204ENST00000445503 ZNF256Q9Y2P7 627 aaPredicted RBP9.19□□□□□ -0.94
MSH6-204ENST00000445503 TRBV25-1A0A075B6N4 114 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 PAX2Q02962 417 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 ZNF418Q8TF45 676 aaPredicted RBP9.18□□□□□ -0.94
MSH6-204ENST00000445503 Q1RN00 199 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 C2CD3Q4AC94 2353 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 A0A096LNJ9 63 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 OOSP1A8MZH6 123 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 NPFFO15130 113 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 CDSNQ15517 529 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 FAM159AQ6UWV7 190 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 ADAMTSL5Q6ZMM2 481 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 Q6ZQT7 251 aa9.18□□□□□ -0.94
MSH6-204ENST00000445503 ZNF815PA8K554 130 aa9.17□□□□□ -0.94
MSH6-204ENST00000445503 LYRM7Q5U5X0 104 aa9.17□□□□□ -0.94
MSH6-204ENST00000445503 HIVEP3Q5T1R4 2406 aa9.17□□□□□ -0.94
MSH6-204ENST00000445503 TRAV21A0A0B4J279 112 aa9.17□□□□□ -0.94
MSH6-204ENST00000445503 ODF1Q14990 250 aa9.17□□□□□ -0.94
MSH6-204ENST00000445503 KHDC1LQ5JSQ8 128 aa9.17□□□□□ -0.94
MSH6-204ENST00000445503 CITED2Q99967 270 aaPredicted RBP9.17□□□□□ -0.94
MSH6-204ENST00000445503 SMPXQ9UHP9 88 aa9.17□□□□□ -0.94
MSH6-204ENST00000445503 MRPS12O15235 138 aaKnown RBP9.17□□□□□ -0.94
MSH6-204ENST00000445503 HERVK_113P61574 105 aa9.17□□□□□ -0.94
MSH6-204ENST00000445503 IGKV3D-20A0A0C4DH25 116 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 MSRB2Q9Y3D2 182 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 PSMB2P49721 201 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 ETDBQ3ZM63 59 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 LY6G5BQ8NDX9 201 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 A0A087WWL8 130 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 H3BMG7 143 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 IGLC6P0CF74 106 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 TMEM190Q8WZ59 177 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 IGF1P05019 195 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 CD7P09564 240 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 UBE2E1P51965 193 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 ZNF56Q15929 161 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 CSTL1Q9H114 145 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 VCX2Q9H322 139 aa9.16□□□□□ -0.94
MSH6-204ENST00000445503 H7C1H1 209 aa9.15□□□□□ -0.94
MSH6-204ENST00000445503 RPL39LQ96EH5 51 aaKnown RBP9.15□□□□□ -0.94
MSH6-204ENST00000445503 USP9YO00507 2555 aaPredicted RBP9.15□□□□□ -0.94
MSH6-204ENST00000445503 TRBV7-1A0A0A6YYK4 115 aa9.15□□□□□ -0.94
MSH6-204ENST00000445503 TMEM238LA0A1B0GVL6 79 aa9.15□□□□□ -0.94
MSH6-204ENST00000445503 ANXA2RQ3ZCQ2 193 aa9.15□□□□□ -0.94
MSH6-204ENST00000445503 ORMDL2Q53FV1 153 aa9.15□□□□□ -0.94
MSH6-204ENST00000445503 RNF185Q96GF1 192 aa9.15□□□□□ -0.94
MSH6-204ENST00000445503 ATMQ13315 3056 aa9.15□□□□□ -0.94
MSH6-204ENST00000445503 PTPN13Q12923 2485 aa9.15□□□□□ -0.94
MSH6-204ENST00000445503 IGHV3-64A0A075B6Q5 118 aa9.15□□□□□ -0.95
MSH6-204ENST00000445503 GNRH2O43555 120 aa9.15□□□□□ -0.95
MSH6-204ENST00000445503 SIVA1O15304 175 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 SUMO2P61956 95 aaKnown RBP9.14□□□□□ -0.95
MSH6-204ENST00000445503 KIR2DL4Q99706 377 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 DMXL1Q9Y485 3027 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 TEX48A0A1B0GUV7 120 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 C2orf66Q6UXQ4 117 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 CEND1Q8N111 149 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 NPFFR1Q9GZQ6 430 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 F8W735 103 aaPredicted RBP9.14□□□□□ -0.95
MSH6-204ENST00000445503 H3BUX3 64 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 HOXA3O43365 443 aaPredicted RBP9.14□□□□□ -0.95
MSH6-204ENST00000445503 ADORA2A-AS1P86434 159 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 LINC01559Q495D7 138 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 SMIM2Q9BVW6 85 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 DPH3P1Q9H4G8 78 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 C11orf21Q9P2W6 132 aa9.14□□□□□ -0.95
MSH6-204ENST00000445503 MAP1AP78559 2803 aaPredicted RBP9.14□□□□□ -0.95
MSH6-204ENST00000445503 TRAV12-3A0A0B4J271 114 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 PLNP26678 52 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 GAGE13Q4V321 117 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 PSMG4Q5JS54 123 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 C9orf139Q6ZV77 190 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 MOB4Q9Y3A3 225 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 COL27A1Q8IZC6 1860 aaPredicted RBP9.13□□□□□ -0.95
MSH6-204ENST00000445503 A6NJY4 79 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 ODF3BA8MYP8 253 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 FGF6P10767 208 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 SH2D6Q7Z4S9 175 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 SMIM20Q8N5G0 67 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 U3KQK5 164 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 NACAE9PAV3 2078 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 ZNF292O60281 2723 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 OVOL3O00110 214 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 ZNF688P0C7X2 276 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 SLC25A16P16260 332 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 ID1P41134 155 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 CCDC140Q96MF4 163 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 RHPN1-AS1Q9BWJ2 59 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 PGPEP1Q9NXJ5 209 aa9.13□□□□□ -0.95
MSH6-204ENST00000445503 UCNP55089 124 aa9.12□□□□□ -0.95
MSH6-204ENST00000445503 ATP5J2P56134 94 aa9.12□□□□□ -0.95
MSH6-204ENST00000445503 MYO9AB2RTY4 2548 aa9.12□□□□□ -0.95
MSH6-204ENST00000445503 A0A087WX48 190 aa9.12□□□□□ -0.95
MSH6-204ENST00000445503 CENPVL3A0A0U1RRI6 287 aa9.12□□□□□ -0.95
MSH6-204ENST00000445503 TRBV12-3P01733 135 aa9.12□□□□□ -0.95
MSH6-204ENST00000445503 WFDC2Q14508 124 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms