RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SLC25A34Q6PIV7 304 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 OR4X2Q8NGF9 303 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 FAM110DQ8TAY7 271 aaPredicted RBP6.41□□□□□ -1.38
CD44-208ENST00000428726 MAP1LC3CQ9BXW4 147 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 TRAV8-6A0A0B4J262 113 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 H3BVH4 76 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 HAX1O00165 279 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 SAP30O75446 220 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 ZNF688P0C7X2 276 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 PAX8Q06710 450 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 C8orf86Q6ZUL3 223 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 ARL6IP6Q8N6S5 226 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 RNASE4P34096 147 aaKnown RBP6.4□□□□□ -1.38
CD44-208ENST00000428726 GAGE1Q13065 139 aa6.4□□□□□ -1.38
CD44-208ENST00000428726 KLK9Q2XQG4 91 aa6.4□□□□□ -1.38
CD44-208ENST00000428726 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.4□□□□□ -1.38
CD44-208ENST00000428726 FA2HQ7L5A8 372 aa6.4□□□□□ -1.38
CD44-208ENST00000428726 AP5S1Q9NUS5 200 aa6.4□□□□□ -1.38
CD44-208ENST00000428726 KLK9Q9UKQ9 250 aa6.4□□□□□ -1.38
CD44-208ENST00000428726 GNRH2O43555 120 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 NPYP01303 97 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 CKS2P33552 79 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 RBX1P62877 108 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 CACNG7P62955 275 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 ANKRD39Q53RE8 183 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 Q6AWC8 147 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 MTURNQ8N3F0 131 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 METTL26Q96S19 204 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 ZFAND3Q9H8U3 227 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 JPT2Q9H910 190 aa6.4□□□□□ -1.39
CD44-208ENST00000428726 A0A1B0GW15 77 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 TAX1BP3O14907 124 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 RIGQ13278 110 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 BVES-AS1Q5T3Y7 98 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 NDFIP1Q9BT67 221 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 RAB9AP51151 201 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 SYNJ2BPP57105 145 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 PCP2Q8IVA1 136 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 EEF1AKMT3Q96AZ1 226 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 CHCHD1Q96BP2 118 aaKnown RBP6.39□□□□□ -1.39
CD44-208ENST00000428726 MOB4Q9Y3A3 225 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 TENM1Q9UKZ4 2725 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 TRAV8-2A0A0B4J237 113 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 SAPCD1Q5SSQ6 148 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 MRPL52Q86TS9 123 aaKnown RBP6.39□□□□□ -1.39
CD44-208ENST00000428726 FER1L6-AS1Q8NA97 138 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 TMEM191AQ9H0A3 160 aa6.39□□□□□ -1.39
CD44-208ENST00000428726 PRELID3AQ96N28 172 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 IGKV3D-20A0A0C4DH25 116 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 H3BUT2 72 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 MGPP08493 103 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 EMP1P54849 157 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 MRPL51Q4U2R6 128 aaKnown RBP6.38□□□□□ -1.39
CD44-208ENST00000428726 COX8CQ7Z4L0 72 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 GATD1Q8NB37 220 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 ORAOV1Q8WV07 137 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 RHPN1-AS1Q9BWJ2 59 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 DKK2Q9UBU2 259 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 TRRAPQ9Y4A5 3859 aa6.38□□□□□ -1.39
CD44-208ENST00000428726 IGHV3-73A0A0B4J1V6 119 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 C7orf71A4D174 169 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 HOXA3O43365 443 aaPredicted RBP6.37□□□□□ -1.39
CD44-208ENST00000428726 COX6B1P14854 86 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 S100A4P26447 101 aaKnown RBP6.37□□□□□ -1.39
CD44-208ENST00000428726 TMEM78Q5T7P6 136 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 FAM74A4Q5TZK3 123 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 SFTA2Q6UW10 78 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 Q96MF0 132 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 MRPS16Q9Y3D3 137 aaKnown RBP6.37□□□□□ -1.39
CD44-208ENST00000428726 PDZD2O15018 2839 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 ZC2HC1BQ5TFG8 222 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 SPANXN1Q5VSR9 72 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 ZNF843Q8N446 348 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 C14orf178Q8N769 122 aaPredicted RBP6.37□□□□□ -1.39
CD44-208ENST00000428726 SIGLEC8Q9NYZ4 499 aa6.37□□□□□ -1.39
CD44-208ENST00000428726 A0A087WWL8 130 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 TRAV12-3A0A0B4J271 114 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 K7ERJ3 54 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 WFDC11Q8NEX6 87 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 SMR3AQ99954 134 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 TRBV7-1A0A0A6YYK4 115 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 GAGE12BA1L429 117 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 BMI1P35226 326 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 ZNF575Q86XF7 245 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 CST9LQ9H4G1 147 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 PSMG4Q5JS54 123 aa6.36□□□□□ -1.39
CD44-208ENST00000428726 FCER1GP30273 86 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 RPS20P60866 119 aaKnown RBP6.35□□□□□ -1.39
CD44-208ENST00000428726 LINC01559Q495D7 138 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 ATP6V0BQ99437 205 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 SLC50A1Q9BRV3 221 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 ZNF747Q9BV97 191 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 NPFFR1Q9GZQ6 430 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 SCRT2Q9NQ03 307 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 IGHV3OR16-12A0A075B7B8 117 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 FABP5P3A8MUU1 101 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 B4DSR2 109 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 PRSS1P07477 247 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 GCSHP23434 173 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 Q5PR19 223 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms