RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RETNQ9HD89 108 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 C10orf113Q5VZT2 155 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 C22orf34Q6ZV56 151 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 COPS9Q8WXC6 57 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 TLN1Q9Y490 2541 aaKnown RBP7.69□□□□□ -1.18
USP54-205ENST00000424265 IGHV3OR16-10A0A075B7F0 116 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 IGKV1-6A0A0C4DH72 117 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 LINC00574Q9H8X3 128 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 CADP27708 2225 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 OVOL3O00110 214 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 IGKV1-39P01597 117 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 IGKV1D-39P04432 117 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 HLA-DRB4P13762 266 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 SMCPP49901 116 aaPredicted RBP7.68□□□□□ -1.18
USP54-205ENST00000424265 PRNTQ86SH4 94 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 RNF152Q8N8N0 203 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 NPIPB3Q92617 1050 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 HLA-DRB4X5D2U9 266 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 A0A1B0GXF2 115 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 IGHG4P01861 327 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 SAA4P35542 130 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 NPC2P61916 151 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 CT83Q5H943 113 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 CRYGBP07316 175 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 FMC1Q96HJ9 113 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 SPTBN4Q9H254 2564 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 M0R3E3 92 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 PLNP26678 52 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 TMEM190Q8WZ59 177 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 PKDREJQ9NTG1 2253 aa7.68□□□□□ -1.18
USP54-205ENST00000424265 CACNA1AO00555 2505 aa7.67□□□□□ -1.18
USP54-205ENST00000424265 IGHV4-30-2A0A087WSY4 118 aa7.67□□□□□ -1.18
USP54-205ENST00000424265 IGHV4-61A0A0C4DH41 118 aa7.67□□□□□ -1.18
USP54-205ENST00000424265 LOXL3P58215 753 aa7.67□□□□□ -1.18
USP54-205ENST00000424265 ROS1P08922 2347 aa7.67□□□□□ -1.18
USP54-205ENST00000424265 ANKRD11Q6UB99 2663 aaPredicted RBP7.67□□□□□ -1.18
USP54-205ENST00000424265 TRAV41A0A0B4J266 112 aa7.67□□□□□ -1.18
USP54-205ENST00000424265 HLA-DMBP28068 263 aa7.67□□□□□ -1.18
USP54-205ENST00000424265 TNRC18O15417 2968 aaPredicted RBP7.67□□□□□ -1.18
USP54-205ENST00000424265 TRGV9Q99603 122 aa7.66□□□□□ -1.18
USP54-205ENST00000424265 SPRNQ5BIV9 151 aa7.66□□□□□ -1.18
USP54-205ENST00000424265 WFDC11Q8NEX6 87 aa7.66□□□□□ -1.18
USP54-205ENST00000424265 IMUPQ9GZP8 106 aa7.66□□□□□ -1.18
USP54-205ENST00000424265 H3BTX0 84 aa7.66□□□□□ -1.18
USP54-205ENST00000424265 DSCR8Q96T75 97 aa7.66□□□□□ -1.18
USP54-205ENST00000424265 IGKV2D-26A0A0A0MRZ7 120 aa7.66□□□□□ -1.18
USP54-205ENST00000424265 ACYP1P07311 99 aa7.66□□□□□ -1.18
USP54-205ENST00000424265 ZNF503Q96F45 646 aa7.66□□□□□ -1.18
USP54-205ENST00000424265 BBC3Q96PG8 261 aaPredicted RBP7.65□□□□□ -1.18
USP54-205ENST00000424265 VKORC1L1Q8N0U8 176 aa7.65□□□□□ -1.18
USP54-205ENST00000424265 LY6G5BQ8NDX9 201 aa7.65□□□□□ -1.18
USP54-205ENST00000424265 PRO1854Q9UHT4 67 aa7.65□□□□□ -1.18
USP54-205ENST00000424265 MKI67P46013 3256 aaKnown RBP7.65□□□□□ -1.18
USP54-205ENST00000424265 IGLV2-8P01709 118 aa7.65□□□□□ -1.18
USP54-205ENST00000424265 HOXB4P17483 251 aaPredicted RBP7.65□□□□□ -1.18
USP54-205ENST00000424265 LYZP61626 148 aa7.65□□□□□ -1.18
USP54-205ENST00000424265 RPL11P62913 178 aaKnown RBP7.65□□□□□ -1.18
USP54-205ENST00000424265 ABCA4P78363 2273 aa7.65□□□□□ -1.18
USP54-205ENST00000424265 A0A0U1RRA0 63 aa7.65□□□□□ -1.19
USP54-205ENST00000424265 TEX49A0A1B0GTD5 131 aa7.65□□□□□ -1.19
USP54-205ENST00000424265 DLX1P56177 255 aa7.65□□□□□ -1.19
USP54-205ENST00000424265 SYNJ2BPP57105 145 aa7.65□□□□□ -1.19
USP54-205ENST00000424265 C2orf83Q53S99 150 aa7.65□□□□□ -1.19
USP54-205ENST00000424265 ZNF785A8K8V0 405 aa7.65□□□□□ -1.19
USP54-205ENST00000424265 H3BUX3 64 aa7.65□□□□□ -1.19
USP54-205ENST00000424265 FAM208BQ5VWN6 2430 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 TRGV3P03979 118 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 DPH3Q96FX2 82 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 METTL26Q96S19 204 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 LINC00473A8K010 186 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 HCP5Q6MZN7 132 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 LGALS9O00182 355 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 LMO4P61968 165 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 ZNF329Q86UD4 541 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 ZNF492Q9P255 531 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 PMS2P5A8MQ11 134 aa7.64□□□□□ -1.19
USP54-205ENST00000424265 PYYP10082 97 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 USMG5Q96IX5 58 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 ARMS2P0C7Q2 107 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 CDSNQ15517 529 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 CRIP3Q6Q6R5 217 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 LINC01620Q4KN68 170 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 PVRIGQ6DKI7 326 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 IL17RELQ6ZVW7 336 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 TMEM86BQ8N661 226 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 USF3Q68DE3 2245 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 FAM223BA6NKX1 122 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 PAX8Q06710 450 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 BRD3OSQ6XYD6 125 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 FAM223AQ8IWN6 122 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 HCFC1P51610 2035 aa7.63□□□□□ -1.19
USP54-205ENST00000424265 CACNA1DQ01668 2161 aa7.62□□□□□ -1.19
USP54-205ENST00000424265 OVOL1O14753 267 aa7.62□□□□□ -1.19
USP54-205ENST00000424265 MRPL35Q9NZE8 188 aaKnown RBP7.62□□□□□ -1.19
USP54-205ENST00000424265 PYGO1Q9Y3Y4 419 aa7.62□□□□□ -1.19
USP54-205ENST00000424265 SPTAN1Q13813 2472 aaKnown RBP7.62□□□□□ -1.19
USP54-205ENST00000424265 BRCA2P51587 3418 aa7.62□□□□□ -1.19
USP54-205ENST00000424265 CRYGDP07320 174 aa7.62□□□□□ -1.19
USP54-205ENST00000424265 CGB3P0DN86 165 aa7.62□□□□□ -1.19
USP54-205ENST00000424265 CGB7P0DN87 165 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms