RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 SRSF1Q07955 248 aaKnown RBP eCLIP8.35□□□□□ -1.074e-7■□□□□ 8.4
DDX56-203ENST00000421223 KIR3DS1Q14943 382 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 HIST2H2BCQ6DN03 193 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 OR10AG1Q8NH19 301 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 SIGLEC8Q9NYZ4 499 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 RPS20P60866 119 aaKnown RBP8.35□□□□□ -1.07
DDX56-203ENST00000421223 SPANXN1Q5VSR9 72 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 C18orf15Q96N68 181 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 MTORP42345 2549 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 A0A087X0K7 114 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 H3BVH4 76 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 S100A4P26447 101 aaKnown RBP8.35□□□□□ -1.07
DDX56-203ENST00000421223 RNASE4P34096 147 aaKnown RBP8.35□□□□□ -1.07
DDX56-203ENST00000421223 RIPPLY3P57055 190 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 COL5A1-AS1Q5SY13 56 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 KLHDC1Q8N7A1 406 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 OR10J6PQ8NGY7 276 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 USMG5Q96IX5 58 aa8.35□□□□□ -1.07
DDX56-203ENST00000421223 CUBNO60494 3623 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 TRAV9-2A0A087WT02 112 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 TRAV26-2A0A0B4J265 109 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 A0A0G2JLM5 398 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 M0R381 172 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 NDUFA4O00483 81 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 SNAI2O43623 268 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 SLC25A16P16260 332 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 HINT1P49773 126 aaPredicted RBP8.34□□□□□ -1.07
DDX56-203ENST00000421223 TMEM190Q8WZ59 177 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 CRXO43186 299 aaPredicted RBP8.34□□□□□ -1.07
DDX56-203ENST00000421223 CRYBA4P53673 196 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 C19orf54Q5BKX5 351 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 PRR9Q5T870 116 aa8.34□□□□□ -1.07
DDX56-203ENST00000421223 DSCR9P59020 149 aa8.33□□□□□ -1.08
DDX56-203ENST00000421223 KHDC1LQ5JSQ8 128 aa8.33□□□□□ -1.08
DDX56-203ENST00000421223 STPG4Q8N801 248 aa8.33□□□□□ -1.08
DDX56-203ENST00000421223 HSPB8Q9UJY1 196 aa8.33□□□□□ -1.08
DDX56-203ENST00000421223 LAMTOR2Q9Y2Q5 125 aa8.33□□□□□ -1.08
DDX56-203ENST00000421223 CHD6Q8TD26 2715 aa8.33□□□□□ -1.08
DDX56-203ENST00000421223 FBLL1A6NHQ2 334 aaKnown RBP8.33□□□□□ -1.08
DDX56-203ENST00000421223 IGLC6P0CF74 106 aa8.33□□□□□ -1.08
DDX56-203ENST00000421223 DEFB104AQ8WTQ1 72 aa8.33□□□□□ -1.08
DDX56-203ENST00000421223 PEF1Q9UBV8 284 aaKnown RBP8.33□□□□□ -1.08
DDX56-203ENST00000421223 U3KQE9 123 aa8.33□□□□□ -1.08
DDX56-203ENST00000421223 TRAV26-1A0A087WT03 109 aa8.32□□□□□ -1.08
DDX56-203ENST00000421223 TSPOP30536 169 aa8.32□□□□□ -1.08
DDX56-203ENST00000421223 TMEM191AQ9H0A3 160 aa8.32□□□□□ -1.08
DDX56-203ENST00000421223 MRPS16Q9Y3D3 137 aaKnown RBP8.32□□□□□ -1.08
DDX56-203ENST00000421223 C9orf139Q6ZV77 190 aa8.32□□□□□ -1.08
DDX56-203ENST00000421223 ZNF575Q86XF7 245 aa8.32□□□□□ -1.08
DDX56-203ENST00000421223 GPHB5Q86YW7 130 aa8.32□□□□□ -1.08
DDX56-203ENST00000421223 DAZ1Q9NQZ3 744 aaKnown RBP8.32□□□□□ -1.08
DDX56-203ENST00000421223 CCL25O15444 150 aa8.32□□□□□ -1.08
DDX56-203ENST00000421223 ZNF493Q6ZR52 646 aa8.32□□□□□ -1.08
DDX56-203ENST00000421223 GATD1Q8NB37 220 aa8.32□□□□□ -1.08
DDX56-203ENST00000421223 K7EP13 123 aa8.31□□□□□ -1.08
DDX56-203ENST00000421223 HOXA3O43365 443 aaPredicted RBP8.31□□□□□ -1.08
DDX56-203ENST00000421223 ZNF688P0C7X2 276 aa8.31□□□□□ -1.08
DDX56-203ENST00000421223 SYNJ2BPP57105 145 aa8.31□□□□□ -1.08
DDX56-203ENST00000421223 Q96MF0 132 aa8.31□□□□□ -1.08
DDX56-203ENST00000421223 AGRNO00468 2067 aa8.31□□□□□ -1.08
DDX56-203ENST00000421223 NF1P21359 2839 aa8.31□□□□□ -1.08
DDX56-203ENST00000421223 APCP25054 2843 aa8.31□□□□□ -1.08
DDX56-203ENST00000421223 IGHV7-4-1A0A0J9YVY3 117 aa8.31□□□□□ -1.08
DDX56-203ENST00000421223 UBR5O95071 2799 aaPredicted RBP8.3□□□□□ -1.08
DDX56-203ENST00000421223 RBAKDNA6NC62 111 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 GATA3P23771 443 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 LINC01559Q495D7 138 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 DPF1Q92782 380 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 ZNF747Q9BV97 191 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 GNRH2O43555 120 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 IGLV1-40P01703 118 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 DEFB136Q30KP8 78 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 C9orf47Q6ZRZ4 202 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 DUX3Q96PT4 197 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 MAP1LC3AQ9H492 121 aa8.3□□□□□ -1.08
DDX56-203ENST00000421223 FLNAP21333 2647 aaKnown RBP8.3□□□□□ -1.08
DDX56-203ENST00000421223 A0A1B0GV72 72 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 TNFRSF6BO95407 300 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 CRIP2P52943 208 aaPredicted RBP8.29□□□□□ -1.08
DDX56-203ENST00000421223 KLK9Q2XQG4 91 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 SMPXQ9UHP9 88 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 KLK9Q9UKQ9 250 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 CACNG7P62955 275 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 COX8CQ7Z4L0 72 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 C11orf44Q8N8P7 122 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 RNF185Q96GF1 192 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 MGPP08493 103 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 LEPP41159 167 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 ANXA2RQ3ZCQ2 193 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 PSMG4Q5JS54 123 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 PHLDA3Q9Y5J5 127 aa8.29□□□□□ -1.08
DDX56-203ENST00000421223 ITPR3Q14573 2671 aa8.28□□□□□ -1.08
DDX56-203ENST00000421223 IGHV4-31P0DP07 118 aa8.28□□□□□ -1.08
DDX56-203ENST00000421223 HTN1P15515 57 aa8.28□□□□□ -1.08
DDX56-203ENST00000421223 C14orf178Q8N769 122 aaPredicted RBP8.28□□□□□ -1.08
DDX56-203ENST00000421223 H3BUA1 57 aa8.28□□□□□ -1.08
DDX56-203ENST00000421223 OVOL1O14753 267 aa8.28□□□□□ -1.08
DDX56-203ENST00000421223 PET117Q6UWS5 81 aa8.28□□□□□ -1.08
DDX56-203ENST00000421223 LINC00477Q96M19 166 aa8.28□□□□□ -1.08
DDX56-203ENST00000421223 TRAV12-2A0A075B6T6 113 aa8.27□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms