RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 RTBDNQ9BSG5 229 aaPredicted RBP5.78□□□□□ -1.48
SCN9A-202ENST00000409435 ATRXP46100 2492 aa5.78□□□□□ -1.48
SCN9A-202ENST00000409435 ANAPC1Q9H1A4 1944 aa5.77□□□□□ -1.48
SCN9A-202ENST00000409435 DEFB135Q30KP9 77 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 C12orf74Q32Q52 190 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 AMTNQ6UX39 209 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 DEFB125Q8N687 156 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 MPLKIPQ8TAP9 179 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 ZNF747Q9BV97 191 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 PLXND1Q9Y4D7 1925 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 FOXL2NBQ6ZUU3 175 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 MPDZO75970 2070 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 TRBV6-7A0A0A0MS04 114 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 G3V4G9 280 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 UQCRQO14949 82 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 LGALS9BQ3B8N2 356 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 ZNF876PQ49A33 203 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 LGALS9CQ6DKI2 356 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 ERCC8Q13216 396 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 IGF2BP2-AS1Q96M15 143 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 PNRC2Q9NPJ4 139 aaKnown RBP5.77□□□□□ -1.49
SCN9A-202ENST00000409435 C14orf132Q9NPU4 83 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 LYZL1Q6UWQ5 148 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 TEN1Q86WV5 123 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 TMEM141Q96I45 108 aa5.77□□□□□ -1.49
SCN9A-202ENST00000409435 ETV2O00321 342 aaPredicted RBP5.76□□□□□ -1.49
SCN9A-202ENST00000409435 ZNF295-AS1Q8N0V1 137 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 IGFBPL1Q8WX77 278 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 FBLN5Q9UBX5 448 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 PLXNA2O75051 1894 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 DOPEY2Q9Y3R5 2298 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 IGKV2D-24A0A075B6R9 120 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 BAALC-AS2P0C853 105 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 C10orf55Q5SWW7 151 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 Q9HAA7 133 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 TMEM89A2RUT3 159 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 NUPR2A6NF83 97 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 ZNF561-AS1K7EIQ3 104 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 K7ERJ3 54 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 LY6G6FQ5SQ64 297 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 GFRA4Q9GZZ7 299 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 ICOSQ9Y6W8 199 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 CACNA1DQ01668 2161 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 LMO4P61968 165 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 Q6ZSV7 163 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 SH2D6Q7Z4S9 175 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 ORMDL1Q9P0S3 153 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 TP53BP1Q12888 1972 aaPredicted RBP5.76□□□□□ -1.49
SCN9A-202ENST00000409435 A0A0J9YY99 117 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 SRRM4A7MD48 611 aaKnown RBP5.76□□□□□ -1.49
SCN9A-202ENST00000409435 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.76□□□□□ -1.49
SCN9A-202ENST00000409435 NDUFA7O95182 113 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 SPATA3Q8NHX4 192 aa5.76□□□□□ -1.49
SCN9A-202ENST00000409435 SUPT4H1P63272 117 aaKnown RBP5.75□□□□□ -1.49
SCN9A-202ENST00000409435 ATP6V0E2Q8NHE4 81 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 LINC00477Q96M19 166 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 CTSZQ9UBR2 303 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 ATP5EP56381 51 aaPredicted RBP5.75□□□□□ -1.49
SCN9A-202ENST00000409435 Q6ZWC4 215 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 C18orf32Q8TCD1 76 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 BUB3O43684 328 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 PROP1O75360 226 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 CFC1BP0CG36 223 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 CFC1P0CG37 223 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 Q6ZUT4 128 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 LINC00311Q8N616 119 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 VSIRQ9H7M9 311 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 WFDC1Q9HC57 220 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 C5orf63A6NC05 138 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 RHODO00212 210 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 FOXI1Q12951 378 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 SCRT2Q9NQ03 307 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 CACNA1AO00555 2505 aa5.75□□□□□ -1.49
SCN9A-202ENST00000409435 IGKV1OR2-108A0A075B7D4 117 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 IGHV3-73A0A0B4J1V6 119 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 IGKV3D-7A0A0C4DH55 119 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 IGKV1D-12P01611 117 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 GATA2P23769 480 aaPredicted RBP5.74□□□□□ -1.49
SCN9A-202ENST00000409435 NMSQ5H8A3 153 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 WDR83OSQ9Y284 106 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 NUP214P35658 2090 aaPredicted RBP5.74□□□□□ -1.49
SCN9A-202ENST00000409435 TRBV19A0A075B6N1 114 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 IGHV7-4-1A0A0J9YVY3 117 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 WISP2O76076 250 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 CRYGBP07316 175 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 C1orf159Q96HA4 380 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 IGHV4OR15-8A0A075B7B6 117 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 A0A087WW49 117 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 BTCP35070 178 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 NDUFV3P56181 108 aaKnown RBP5.74□□□□□ -1.49
SCN9A-202ENST00000409435 ZFP2Q6ZN57 461 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 TRAV3A0A0B4J244 114 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 H0YIZ8 118 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 ZNF138P52744 262 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 SS18Q15532 418 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 OXLD1Q5BKU9 147 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 ZNF319Q9P2F9 582 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 FOXI2Q6ZQN5 318 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 LINC01006Q8NI28 216 aa5.74□□□□□ -1.49
SCN9A-202ENST00000409435 CYTL1Q9NRR1 136 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms