RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TMEM126AQ9H061 195 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 CD28P10747 220 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 NFE4Q86UQ8 179 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 DYNAPQ8N1N2 210 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 PLEKHB2Q96CS7 222 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 SLC25A15Q9Y619 301 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 Q71RC1 249 aaPredicted RBP7.29□□□□□ -1.24
COL28A1-201ENST00000399429 RPL39LQ96EH5 51 aaKnown RBP7.29□□□□□ -1.24
COL28A1-201ENST00000399429 C7orf69Q9H7B7 122 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 NOTCH2Q04721 2471 aa7.29□□□□□ -1.24
COL28A1-201ENST00000399429 UNC80Q8N2C7 3258 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 VCYO14598 125 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 GAS8-AS1O95177 125 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 MYCNOSP40205 109 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 C15orf32Q32M92 178 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 HHLA3Q9XRX5 114 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 A0A096LNJ9 63 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 CD3EP07766 207 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 ZNF625Q96I27 306 aaPredicted RBP7.28□□□□□ -1.24
COL28A1-201ENST00000399429 CPAMD8Q8IZJ3 1885 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 CFAP54Q96N23 3096 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 DUX5Q96PT3 197 aa7.28□□□□□ -1.24
COL28A1-201ENST00000399429 DUSP14O95147 198 aaKnown RBP7.27□□□□□ -1.24
COL28A1-201ENST00000399429 TMEM190Q8WZ59 177 aa7.27□□□□□ -1.24
COL28A1-201ENST00000399429 MYO18BQ8IUG5 2567 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 NACAE9PAV3 2078 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 BSPH1Q075Z2 132 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 TIMM21Q9BVV7 248 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 CDIP1Q9H305 208 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 M0QXV9 152 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 ZNF80P51504 273 aaPredicted RBP7.27□□□□□ -1.25
COL28A1-201ENST00000399429 MUSTN1Q8IVN3 82 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 EEF1AKMT3Q96AZ1 226 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 ARHGAP32A7KAX9 2087 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 TRACP01848 142 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 ZNF876PQ49A33 203 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 TEX36Q5VZQ5 186 aa7.27□□□□□ -1.25
COL28A1-201ENST00000399429 TRGV11A0A075B6L2 103 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 WI2-2373I1.2A0A1W2PRP0 233 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 BUB1B-PAK6H3BSN5 160 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 NTN3O00634 580 aaPredicted RBP7.26□□□□□ -1.25
COL28A1-201ENST00000399429 RHODO00212 210 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 TRAV13-1A0A0B4J241 112 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 IGKV3OR2-268A0A0C4DH90 116 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 C11orf86A6NJI1 115 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 TMEM178BH3BS89 294 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 PF4V1P10720 104 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 LINC00527Q9UJ94 153 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 TNFRSF18Q9Y5U5 241 aa7.26□□□□□ -1.25
COL28A1-201ENST00000399429 J3KT08 172 aa7.25□□□□□ -1.25
COL28A1-201ENST00000399429 IGLV2-11P01706 119 aa7.25□□□□□ -1.25
COL28A1-201ENST00000399429 IGFBPL1Q8WX77 278 aa7.25□□□□□ -1.25
COL28A1-201ENST00000399429 BAALCQ8WXS3 180 aa7.25□□□□□ -1.25
COL28A1-201ENST00000399429 AGPAT4-IT1Q9H0P7 198 aa7.25□□□□□ -1.25
COL28A1-201ENST00000399429 SDHAF1A6NFY7 115 aa7.25□□□□□ -1.25
COL28A1-201ENST00000399429 LY6G6EA0A0G2JKS1 128 aa7.25□□□□□ -1.25
COL28A1-201ENST00000399429 Q6ZQT7 251 aa7.25□□□□□ -1.25
COL28A1-201ENST00000399429 U3KQA8 63 aa7.25□□□□□ -1.25
COL28A1-201ENST00000399429 NUP37Q8NFH4 326 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 PTPRQQ9UMZ3 2332 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 IGHV3-73A0A0B4J1V6 119 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 PRAC2D3DTV9 90 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 IGHV3-11P01762 117 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 SPRY4Q9C004 299 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 CDH23Q9H251 3354 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 CACNA1AO00555 2505 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 TRAV41A0A0B4J266 112 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 RPL39P62891 51 aaKnown RBP7.24□□□□□ -1.25
COL28A1-201ENST00000399429 TRBV7-3A0A075B6L6 115 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 TRAV12-1A0A0B4J245 112 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 RBAKDNA6NC62 111 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 I3L2K1 104 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 C19orf54Q5BKX5 351 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 MORN3Q6PF18 240 aaPredicted RBP7.24□□□□□ -1.25
COL28A1-201ENST00000399429 MDS2Q8NDY4 140 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 CLEC2BQ92478 149 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 FAM110AQ9BQ89 295 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 TOMM7Q9P0U1 55 aa7.24□□□□□ -1.25
COL28A1-201ENST00000399429 TRBV10-2A0A0K0K1G8 114 aa7.23□□□□□ -1.25
COL28A1-201ENST00000399429 IGHG4P01861 327 aa7.23□□□□□ -1.25
COL28A1-201ENST00000399429 COPS9Q8WXC6 57 aa7.23□□□□□ -1.25
COL28A1-201ENST00000399429 FAM208BQ5VWN6 2430 aa7.23□□□□□ -1.25
COL28A1-201ENST00000399429 K7EIM0 57 aa7.23□□□□□ -1.25
COL28A1-201ENST00000399429 NPFFO15130 113 aa7.23□□□□□ -1.25
COL28A1-201ENST00000399429 NDUFA12Q9UI09 145 aa7.23□□□□□ -1.25
COL28A1-201ENST00000399429 U3KQK5 164 aa7.23□□□□□ -1.25
COL28A1-201ENST00000399429 CRYGCP07315 174 aa7.22□□□□□ -1.25
COL28A1-201ENST00000399429 C5orf47Q569G3 176 aa7.22□□□□□ -1.25
COL28A1-201ENST00000399429 RNASE13Q5GAN3 156 aaKnown RBP7.22□□□□□ -1.25
COL28A1-201ENST00000399429 RUSC1-AS1Q66K80 236 aa7.22□□□□□ -1.25
COL28A1-201ENST00000399429 PHLDA1Q8WV24 401 aaPredicted RBP7.22□□□□□ -1.25
COL28A1-201ENST00000399429 ACACBO00763 2458 aa7.22□□□□□ -1.25
COL28A1-201ENST00000399429 IGLV2-23P01705 113 aa7.22□□□□□ -1.25
COL28A1-201ENST00000399429 RNASE6Q93091 150 aaKnown RBP7.22□□□□□ -1.25
COL28A1-201ENST00000399429 TMEM141Q96I45 108 aa7.22□□□□□ -1.25
COL28A1-201ENST00000399429 DNAH14Q0VDD8 3507 aa7.22□□□□□ -1.25
COL28A1-201ENST00000399429 LOXP28300 417 aaPredicted RBP7.22□□□□□ -1.25
COL28A1-201ENST00000399429 GATA4P43694 442 aa7.22□□□□□ -1.25
COL28A1-201ENST00000399429 ATP5J2P56134 94 aa7.22□□□□□ -1.25
COL28A1-201ENST00000399429 RNF185Q96GF1 192 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms