RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 VCYO14598 125 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 NCR2O95944 276 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 HNRNPA3P51991 378 aaKnown RBP6.3□□□□□ -1.4
PTPRD-204ENST00000397606 PTTG1IPP53801 180 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 RIPPLY3P57055 190 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 ZNF493Q6ZR52 646 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 C18orf15Q96N68 181 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 AMN1Q8IY45 258 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 CHCHD1Q96BP2 118 aaKnown RBP6.3□□□□□ -1.4
PTPRD-204ENST00000397606 PRAC2D3DTV9 90 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 HBDP02042 147 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 ZNF503Q96F45 646 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 MRAP2Q96G30 205 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 CHCHD5Q9BSY4 110 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 TMEM70Q9BUB7 260 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 TANC2Q9HCD6 1990 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 TRAV2A0A0B4J234 112 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 A0A0J9YX75 114 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 SERF1AO75920 110 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 C16orf95Q9H693 158 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 SMAD5-AS1Q9Y6J3 95 aa6.3□□□□□ -1.4
PTPRD-204ENST00000397606 AKAP13Q12802 2813 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 MGAQ8IWI9 3026 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 SMIM27A0A1W2PRY6 76 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 A8MWP6 167 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 K7EQG2 157 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 IGF2BP2-AS1Q96M15 143 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 TRBV7-9A0A0J9YWB2 115 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 GAGE12BA1L429 117 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 M0R2P5 195 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 GAGE7O76087 117 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 GAGE12FP0CL80 117 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 GAGE12GP0CL81 117 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 GAGE12IP0CL82 117 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 TRPT1Q86TN4 253 aaKnown RBP6.29□□□□□ -1.4
PTPRD-204ENST00000397606 MAP6D1Q9H9H5 199 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 TRBV6-1A0A0K0K1D8 114 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST1H2BKO60814 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST1H2BJP06899 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST1H2BOP23527 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST1H2BBP33778 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST1H2BDP58876 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST1H2BCP62807 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST2H2BEQ16778 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST1H2BHQ93079 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST1H2BNQ99877 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 HIST1H2BMQ99879 126 aa6.29□□□□□ -1.4
PTPRD-204ENST00000397606 K7EN84 100 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 VCX2Q9H322 139 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 IFITM10A6NMD0 228 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 F5H768 121 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 FAM104BQ5XKR9 115 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 NIT1Q86X76 327 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 WDFY4Q6ZS81 3184 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 A0A087WX48 190 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 ZNF324O75467 553 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-204ENST00000397606 HLA-DRB4P13762 266 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 SUMO2P61956 95 aaKnown RBP6.28□□□□□ -1.4
PTPRD-204ENST00000397606 LAGE3Q14657 143 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 C20orf144Q9BQM9 153 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 HLA-DRB4X5D2U9 266 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 FN1P02751 2386 aaKnown RBP6.28□□□□□ -1.4
PTPRD-204ENST00000397606 GCSHP23434 173 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 FAM19A2Q8N3H0 131 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 GSN-AS1Q9NRJ2 163 aa6.28□□□□□ -1.4
PTPRD-204ENST00000397606 TEX48A0A1B0GUV7 120 aa6.27□□□□□ -1.4
PTPRD-204ENST00000397606 SLAQ13239 276 aa6.27□□□□□ -1.4
PTPRD-204ENST00000397606 LINC01559Q495D7 138 aa6.27□□□□□ -1.4
PTPRD-204ENST00000397606 GNRH2O43555 120 aa6.27□□□□□ -1.41
PTPRD-204ENST00000397606 NMUP48645 174 aa6.27□□□□□ -1.41
PTPRD-204ENST00000397606 CFHR3Q02985 330 aa6.27□□□□□ -1.41
PTPRD-204ENST00000397606 C16orf74Q96GX8 76 aa6.27□□□□□ -1.41
PTPRD-204ENST00000397606 PAM16Q9Y3D7 125 aa6.27□□□□□ -1.41
PTPRD-204ENST00000397606 MRAPQ8TCY5 172 aa6.27□□□□□ -1.41
PTPRD-204ENST00000397606 H3BRM9 83 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 TYMSP04818 313 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 HOXA5P20719 270 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 GFI1BQ5VTD9 330 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 UBE2DNLQ8IWF7 75 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 ALKBH7Q9BT30 221 aaPredicted RBP6.26□□□□□ -1.41
PTPRD-204ENST00000397606 TMEM170BQ5T4T1 132 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 NOP10Q9NPE3 64 aaKnown RBP6.26□□□□□ -1.41
PTPRD-204ENST00000397606 HELZ2Q9BYK8 2649 aaKnown RBP6.26□□□□□ -1.41
PTPRD-204ENST00000397606 ADARB2-AS1A8MUL3 147 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 TNFRSF6BO95407 300 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 SRSF9Q13242 221 aaKnown RBP eCLIP6.26□□□□□ -1.41
PTPRD-204ENST00000397606 ODF3Q96PU9 254 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 U3KQE9 123 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 SNCGO76070 127 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 CRPP02741 224 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 LGALS3P17931 250 aaKnown RBP6.26□□□□□ -1.41
PTPRD-204ENST00000397606 C18orf65Q6ZTR6 163 aa6.26□□□□□ -1.41
PTPRD-204ENST00000397606 MRPL16Q9NX20 251 aaKnown RBP6.26□□□□□ -1.41
PTPRD-204ENST00000397606 SMKR1H3BMG3 65 aa6.25□□□□□ -1.41
PTPRD-204ENST00000397606 DEFB1P60022 68 aa6.25□□□□□ -1.41
PTPRD-204ENST00000397606 MIEN1Q9BRT3 115 aa6.25□□□□□ -1.41
PTPRD-204ENST00000397606 PRR31Q5SQ13 230 aa6.25□□□□□ -1.41
PTPRD-204ENST00000397606 IGHV3-16A0A0C4DH30 117 aa6.25□□□□□ -1.41
PTPRD-204ENST00000397606 IGLL1P15814 213 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms